Aass008159.1
Basic Information
- Insect
- Antheraea assamensis
- Gene Symbol
- -
- Assembly
- GCA_035772565.1
- Location
- JAQQSE010000039.1:6023180-6027059[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0071 0.56 11.5 9.4 1 23 146 169 146 169 0.97 2 18 0.00013 0.011 16.9 2.1 1 23 178 201 178 201 0.96 3 18 0.0014 0.11 13.7 0.3 2 23 214 236 213 236 0.96 4 18 0.0018 0.14 13.3 2.4 1 23 245 268 245 268 0.96 5 18 2.7e-05 0.0022 19.1 1.3 1 23 280 303 280 303 0.97 6 18 0.00016 0.012 16.7 1.1 2 23 332 354 331 354 0.97 7 18 0.00052 0.042 15.0 1.5 2 23 364 386 363 386 0.96 8 18 0.18 14 7.0 4.9 2 19 391 408 390 410 0.93 9 18 0.0085 0.68 11.2 0.5 2 21 416 435 415 438 0.94 10 18 0.054 4.3 8.7 0.8 3 23 448 469 446 469 0.95 11 18 9.2e-05 0.0073 17.4 2.2 1 23 474 497 474 497 0.97 12 18 0.0035 0.28 12.4 2.7 2 23 511 533 510 533 0.97 13 18 0.0031 0.25 12.6 2.0 1 23 557 580 557 581 0.94 14 18 0.27 22 6.5 0.0 2 23 587 608 586 608 0.94 15 18 1 81 4.7 2.5 2 23 615 636 614 636 0.94 16 18 7.5 6e+02 1.9 0.8 1 23 673 695 673 695 0.81 17 18 0.01 0.81 11.0 0.2 1 23 702 724 702 724 0.97 18 18 0.086 6.9 8.1 1.9 1 23 730 753 730 753 0.97
Sequence Information
- Coding Sequence
- ATGTCAATCAAATTAGAAGATATAAAAGTTGAAAATGTTGAATCTAGCCGTAAAGATCCAACTTTCTTTCTCCCTGAAGAAGAAATGTCGtatgatataaagaaaaaaaagaaaaaaaagaagaaaacgCAAGAGGATCCCTTTAAGGATTTAGATGTAGAGGCAGTTAATTTTCCCGCAACTCCGACATTAGCTTTGGATCCAGAAGTTACTATAAAAGTGGAGAACATTGAGGTTGAATTAGATTTTAAAGATttcacAGATGATAATGGAATGTTAATGGAAAATAATGCACATGAAGAAAGTCAACCCGAACCAGCTATAAAGATAGAAGATCAAACACATGAGGCAGTGTTACTTACATTTGAGAATGTTGTTACAGATAAGGGTGTCCTTGAATACAAAACAAGAGTAAAGGAAGAACCTGGTACAGTACACAAATGTAAAGTGTGTCATTTAGTGTTCAAGTCCAATAAAACTTTACATATGCACCAAAAAAGGAAGCATAAAATTTTTAGGAAATCCTTTAAACATATATGTGACTATTGTACAATGTCCTATGAAACAAAGAATAGTCTAATTGCACATATGAAAAGAAAACATGGTCCTAATTCGTCAAAAGATGATACAGAAGAACTTACATGTGAGATTTGTGCTCTAGTCTTTAAAGGGTCGGCTCGGTTGCGAATGCACATGAGGCGAAAACATGGTTCCTATAAAGACTCTTTCCAACATATATGCAACGATTGTGGATTGACATATGACAAACACAGAAGTCTTGTCGTCCACATCCAAAGAAAGCATTCGGGAATAAAGCCTCAAATTTCTAATCAATGGTTCAATTGTCCATTCTGCCCGAAAGCTTTTACTAAACGGGAAACATATGCTCGGCATATACAAAGAAAGCATCAAATAAATGAAGCAGGGGTAATAAGTGATAATAAAACTCCTGAAGAATTGGATGGTGCATGGAATGAACAAACGGGAGAGATAACTTGTAAACAATGTCCTCTGATGTTTACCTCAATTAACTACTTAAAGTTACATATGAGGAGAAAGCACAATGCTTTGAAGGAGTCCTTCAGACTTAAATGCAGAATATGTAACCTCTCTTACGATAAATTGGAAAGTTTAAAACGTCATGTACGCAGAAAACATGACACAAGGTTGCACTGTACCAtctgtaataaacattttaacacgACAGAGCATTACGCGAGCCATTCACATGCTAAATTGGTTAAGGAATGTACTCTCTGCGGCTTAATATTTGCCTCTGAAGGAGGTTTAGCAAAACATCTACGATGTACACACAAGATAGATACACCGAagactatattttgtaacatatgcAATGCAGGATTTCATGATAAACGTCAATTGAAACCGCATTTATTAAAGGTGCATTTAAAAGTATCATATACATGTAAATTctgtaacaaaatttttaaagcGAAAGAGAGTTACAAACGACACATAATAGTCAAGCATCCTACAACAACTAAACAGGAAGTGAATACAGATATGCAGAAATGTGATAAATGTATGGAGACATTTAAGGACGAGTTCGAGTTATGTcgtcatataaataaagtgcATGTCACAGAGACAAATCAAACTGAAACACAGTGGTTGGAAGTGAAGAAGGAAGAGGTGGACAAAGATACATACCAGTGCACAAAATGCTCAGACACATACTCATCATGGGTACAGCTCAAAGCACATTATGAGCAGAATCATCATATATTTACTGAGACACAGTGTCAGATGTGCGGTGAAATCATACCTGCAAACGAATTACAGAAACATATAAAGATTGCTCATGTGGAGACAATTGAAATGAGTTGCAAATATTGTGAGTTTAAAACATTGTCCAAAAACAGTCTAACTCAACATACATTGAGGCATAAGAATGCTATGACAATACACTGTGATTTCAACGGTTGCAGATATAAGACTTTCTATGAAATAGCTATGGAGAAGCACAAACGTAAACATAAGGATTTGGGTGTTAAATTTCAATGCACACAGTGTCCATTCCAAAGTATGAATAAGTATATCCTAAAGTATCACGAGGAAGCACACACCACAGGGAAGAAACGTTATACATGTGACCAGTGTGACTATGCTACTATTTTACCAGCAAACTTGGTTCAGCACAAATATAAACATTCAACGGAGAAAAGGTTTAAGTGTGAAGTTTGTCCATTTGCCACTAAGTACAATACATCACTAAGATTTCATGTACGAAAAAAACACTGTGATCTTCCTGCAAGttaa
- Protein Sequence
- MSIKLEDIKVENVESSRKDPTFFLPEEEMSYDIKKKKKKKKKTQEDPFKDLDVEAVNFPATPTLALDPEVTIKVENIEVELDFKDFTDDNGMLMENNAHEESQPEPAIKIEDQTHEAVLLTFENVVTDKGVLEYKTRVKEEPGTVHKCKVCHLVFKSNKTLHMHQKRKHKIFRKSFKHICDYCTMSYETKNSLIAHMKRKHGPNSSKDDTEELTCEICALVFKGSARLRMHMRRKHGSYKDSFQHICNDCGLTYDKHRSLVVHIQRKHSGIKPQISNQWFNCPFCPKAFTKRETYARHIQRKHQINEAGVISDNKTPEELDGAWNEQTGEITCKQCPLMFTSINYLKLHMRRKHNALKESFRLKCRICNLSYDKLESLKRHVRRKHDTRLHCTICNKHFNTTEHYASHSHAKLVKECTLCGLIFASEGGLAKHLRCTHKIDTPKTIFCNICNAGFHDKRQLKPHLLKVHLKVSYTCKFCNKIFKAKESYKRHIIVKHPTTTKQEVNTDMQKCDKCMETFKDEFELCRHINKVHVTETNQTETQWLEVKKEEVDKDTYQCTKCSDTYSSWVQLKAHYEQNHHIFTETQCQMCGEIIPANELQKHIKIAHVETIEMSCKYCEFKTLSKNSLTQHTLRHKNAMTIHCDFNGCRYKTFYEIAMEKHKRKHKDLGVKFQCTQCPFQSMNKYILKYHEEAHTTGKKRYTCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114320;
- 90% Identity
- iTF_00114320;
- 80% Identity
- -