Aass023534.1
Basic Information
- Insect
- Antheraea assamensis
- Gene Symbol
- -
- Assembly
- GCA_035772565.1
- Location
- JAQQSE010000189.1:500555-508333[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.12 9.2 7.7 0.1 1 23 44 67 44 67 0.91 2 18 0.0024 0.19 12.9 0.1 2 23 94 116 93 116 0.96 3 18 0.01 0.83 10.9 2.2 2 23 139 160 138 160 0.97 4 18 0.002 0.16 13.2 0.3 1 23 164 186 164 186 0.96 5 18 0.0056 0.45 11.8 1.2 1 23 191 213 191 213 0.98 6 18 0.016 1.3 10.3 3.3 1 23 221 244 221 244 0.95 7 18 0.0016 0.13 13.5 1.8 1 23 251 274 251 274 0.98 8 18 1.4e-05 0.0011 20.0 3.2 1 23 280 302 280 302 0.97 9 18 0.0065 0.51 11.6 0.4 1 23 390 413 390 413 0.95 10 18 0.048 3.8 8.9 0.4 2 23 439 461 438 461 0.94 11 18 0.00019 0.015 16.4 1.9 2 23 484 505 483 505 0.97 12 18 0.0043 0.34 12.2 0.2 1 23 509 531 509 531 0.98 13 18 0.00027 0.021 15.9 2.0 1 23 536 559 536 559 0.97 14 18 9.1 7.2e+02 1.7 1.4 3 12 568 577 567 580 0.88 15 18 2.7 2.2e+02 3.3 0.5 12 23 586 598 584 598 0.90 16 18 0.0008 0.064 14.4 2.8 1 23 604 626 604 626 0.98 17 18 0.0011 0.087 14.0 0.6 1 23 632 654 632 654 0.99 18 18 0.15 12 7.3 6.0 1 21 660 680 660 683 0.94
Sequence Information
- Coding Sequence
- ATGGAAAAGGCAAAAACTATTGAAGATAAACTACAGCCTAAAATTGAGTTAGCATTACATCGAAATAATATAAGGGAAATTCTGTTATCATCGAATGCTACACCGATTCGAAGATATGGAGGTATAGGTTACACGTGTGCATTCTGTGATAACCAGTACCCAGAACCCGAAGAACTAAGGCAGCACACGGCCGATACCCACAAGGACATATCCCTTGCAAAGTTTATGACGAACGACAATCTAAACCATTACTTAGTGAAGCTAGATATAACAGCGCTACGCTGCAAAATTTGTAACATTAGCATCTCCACTCTAGATGGTCTGATGGATCATCTTAAGAGCGTTCACGAGCGaaagatattcaaaaatatcaaGAATAGAATCTTGCCGTTCAGATTTGACAGTGACATGATGCGATGCGCCATCTGCGAGCACGTTTTCAACACATTCAAAAAGCTGATGGAACATACGAGCACTCATTTCAGGAACTTCATCTGCAAAGTCTGCGATGCTGGATTCGTTAACCACAGCGCTTTAAAAGGCCATTCATTGAGCCACGAGACTGGTGCTTTCATTTGCTCGTACTGTCCGAAGGTTCTTAGCAACATGAGACAGAAAACCAATCATGAAAAAACGCACCGATACGTGGACAATAAGCAGTACAAATGTGGGTATTGTAACGAGGCCTTCAAAACGTGCAGGAAGAAGGAAATGCATTTAAATCAAATTCATGGTGTGCCTCCCGTCACATATAAGTGTCAAGCTTGCGACAAAAcgtttaaaataagaaaagttttcCGGGTCCACATAAAAAGAGATCACTTGATGGAGAGACACCACAAGTGTACTGTCTGCGAGAAGAGTTTCTTCAGATCTGAACAGTTGAAAGAGCACATGGTACGGCACACCGGACTTAGGGAGTTCGAGTGTGCAATTTGTATGAAGAAATTTGGTGCTAAGGGTACAACGCGGCGAACTAGGATAGTCGAAATTGCGAAACCAGCAGAACCGACAGTCGAATTGAAGCATATCAATGGGAAAACACGAAGGAAGCCCAGAACGGGACCAAAAAATGGCGTGACGGAAGCGATTAAAAATAGAATCAATCTGAAAAATGTCCTTCTCTATTCGAACGCTACGCCGATTAAATTCAAAGACAGCCTCGGTTATCGTTGCTCGTTTTGTCCGATGCAATTCCCAGAAGCGATGGATTTGAAACAGCACACATTAAATCAGCACAACGACGATGACCTTATTAGGGAAATTGCGGAAAAATTTAACGAACAAGTAATGAAAGTGGATATAACCCTATTGAGCTGCTCATTATGCGATACGGCATTCGATGACTTGAATAGGTTTATAAATCATCTCACATCTAAACATGATAAAGTAATGTACACCAACGTTAAGAACTGGATACTGCCGTTCCAGTTTTACGATGAAGAGCTCCGCTGTTCCATTTGCGGTGCTACCTACACCACGTTTAAATTATTGCATGAACATATGAACAAGCATTACCCTAATTATTTCTGTGACATTTGCGGCGTCGGGTACATAACGGACGCAGGGCGAAAGAGACATATGAAACGGCACGACGGCGGAGAATACACATGCAATCAGTGTAAAAAAGTCTTCACGAGCGCACAGAAGAGAGCCCGTCACGTCCGCAATACACATTTAGGGCTGAACAAGAGGAATTTATGCAATTTCTGCGATGAGAGATTCTGCGACTACTGGCAGAGATTGATCATATGTAACCGACGGCAGTTGAACAAGCATACGAGGAAAGACCACCTTCACGAGAGGAACCATAAATGTCCCGAATGTGAGATGACATTCTTCGTGAAGAACACTTTGGATAAACATATGACGAAGCACACCGGCGCGCGCCATTACCAATGTGACGTGTGTTCGAAATGGTATGGAAGGAAACAGACTTTAAGAGAGCACCTGAGAATCCATGCGAACGATAGGAGATTCACGTGCGCGCATTGCGGTCTGGCGTTCATTCAGAAGTGTACTTGGAAAAATCATGTGAAATGTAAACATGGAGAAGTCGTTAACTGA
- Protein Sequence
- MEKAKTIEDKLQPKIELALHRNNIREILLSSNATPIRRYGGIGYTCAFCDNQYPEPEELRQHTADTHKDISLAKFMTNDNLNHYLVKLDITALRCKICNISISTLDGLMDHLKSVHERKIFKNIKNRILPFRFDSDMMRCAICEHVFNTFKKLMEHTSTHFRNFICKVCDAGFVNHSALKGHSLSHETGAFICSYCPKVLSNMRQKTNHEKTHRYVDNKQYKCGYCNEAFKTCRKKEMHLNQIHGVPPVTYKCQACDKTFKIRKVFRVHIKRDHLMERHHKCTVCEKSFFRSEQLKEHMVRHTGLREFECAICMKKFGAKGTTRRTRIVEIAKPAEPTVELKHINGKTRRKPRTGPKNGVTEAIKNRINLKNVLLYSNATPIKFKDSLGYRCSFCPMQFPEAMDLKQHTLNQHNDDDLIREIAEKFNEQVMKVDITLLSCSLCDTAFDDLNRFINHLTSKHDKVMYTNVKNWILPFQFYDEELRCSICGATYTTFKLLHEHMNKHYPNYFCDICGVGYITDAGRKRHMKRHDGGEYTCNQCKKVFTSAQKRARHVRNTHLGLNKRNLCNFCDERFCDYWQRLIICNRRQLNKHTRKDHLHERNHKCPECEMTFFVKNTLDKHMTKHTGARHYQCDVCSKWYGRKQTLREHLRIHANDRRFTCAHCGLAFIQKCTWKNHVKCKHGEVVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -