Aass003994.1
Basic Information
- Insect
- Antheraea assamensis
- Gene Symbol
- -
- Assembly
- GCA_035772565.1
- Location
- JAQQSE010000019.1:6125998-6129773[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.8 6.2e+02 1.9 1.4 1 23 18 40 18 40 0.89 2 20 0.0002 0.016 16.3 0.1 2 23 64 85 63 85 0.96 3 20 2.8 2.2e+02 3.3 1.7 5 23 93 112 90 112 0.93 4 20 1.3e-05 0.001 20.1 0.3 1 23 186 208 186 208 0.97 5 20 0.0028 0.22 12.7 0.9 2 23 215 236 214 236 0.97 6 20 0.00027 0.022 15.9 1.0 2 23 243 264 243 264 0.97 7 20 0.00026 0.021 16.0 2.9 1 23 270 292 270 292 0.97 8 20 1.7e-05 0.0013 19.7 0.3 1 23 298 320 298 320 0.99 9 20 3.6e-06 0.00028 21.8 4.5 1 23 327 349 327 349 0.99 10 20 0.7 55 5.2 0.5 1 23 355 378 355 378 0.94 11 20 0.00012 0.0094 17.1 1.9 1 23 384 407 384 407 0.95 12 20 2.7e-05 0.0021 19.1 3.1 1 23 412 435 412 435 0.98 13 20 6.2e-05 0.005 17.9 0.6 1 23 440 463 440 463 0.95 14 20 0.038 3 9.2 1.1 2 22 467 487 466 487 0.94 15 20 0.45 36 5.8 0.7 2 23 491 513 490 513 0.94 16 20 0.14 11 7.4 2.2 2 23 521 542 520 542 0.93 17 20 7.6e-05 0.006 17.7 1.6 1 23 548 571 548 571 0.98 18 20 1.5 1.2e+02 4.1 0.6 2 21 576 595 575 596 0.91 19 20 0.00032 0.026 15.7 0.1 1 23 603 625 603 625 0.97 20 20 4e-06 0.00032 21.7 1.2 1 23 631 654 631 654 0.97
Sequence Information
- Coding Sequence
- ATGGGTATATCGttaaaAAGACTGGAAGTAGTTTTGGATCGTGTGAAAATATATGACTGTAAGGATTGTCTACAAGGGTTCCTTAGTCACAGAGACTATTTATTACATCAAGTGCAACATACACATCACCAAATATTGAACTCTAGAGATCGATACTATAATAAAGGTTATGATTCACTGAAAGTCAATAAATGTGAAGAATGTGGCctcaaatttgttttaaagaGTACTTTGGAAGCTCATCTTGTAGTTCATGCTCCTTACCCTCACATATGCCATTGCGGTATTGGATATTATAGTAGTAGAGACCTCGATTCTCACAAAAAGTTAGTAcatgaaaatgaaattaatcaAAAACTCTCCATTcccaaagaaaatattaaatacaagcCTCAGAGTAAAGAATCAAATCCCAAAAGAAAGTCAAACATAAAACCAAAATTGAAAGCCGATGTAGCATTTCAACAGAAGTCCAAatttaagaaaagaaaaagtaGGAACTCTTCAAACAAGGACCGAATGAAAATAGAAGAGGACGAAGATGCCAATGGTGATTATGTCTGTCCAGTCTGTGCAAAATCATACAACCAAAAAGATAAACTCATACGACATTTATCCAATCATTGTAGCAGCAGAGATTTAAAATGCGTACTATGCGAGAAGAAATTCACCCAAACGGGCAGCATCAAATTACATCTGATGAGACACGCAGGAATAAAGGATGAGGAATGTAGTTATTGCGATAAAAAATTCGCTGACCGCTATGGCCGTATGACGCACGAGAGAACCCACACTGGTATCAAGCCTTACTGCTGCAGGTTCTGCGCGAAAACTTTTAGCGATCAGTCCGCAATGATGCGACACGAAAGAATCCACACAGGGGATAAACGTTACAAATGTCAATATTGTACTAAGGCGTTCTCTGACGCAGGTGCCGCTATAAGACATCGCTTAACACACGCAAACAATGGACAGACATACACATGCGATTTATGCGACAGAAAATTTACAACCAAATTTTATCTAAACCATCACATGAACATACATAAACTGGAAAAGAATTATCAGTGTGATCTATGTTCTAAGTGGTTCTTATTGAAACAATATCTGAAGATCCATATTAGTTCAgtgcattttaaatatgaaagatATGAATGTGATCAGTGCGGTAAGAAGTTCCAAGTCAAGCAagatttacaaaaacatttcgaAAGGAaacatgataatatatattatcaatgtGATGACTGTGATAAGAACTTTAAAAGTCATTATGGCTTGGATCAACATAAAAGAAAGGTTCATAGAAGTCGTCAATTCATGTGCAACGACTGCCCCAATCAGTATACAACGAAATCGGAACTGTTGcggcatattataaataaacattttggtATTAAATGCGAACGGTGTGCCTCACATTTCCGATCCAACGGAGAGTTGGAGAAACATAAAAGAAAAGGCTGCATCAAATGTCTCAAATGTGACAGATTGTTCCCCAGCGTTGCACTAAGAACGAAACATTTCAAAGTGTTTCATGTAAAACAAATTAAGCATGACAAATGTGATATCTGTGGCAAATACTACAGAGGGGGTTGTTTGAACAGACACAAAGCGAAATTTCATGGCACCCTTAAAGAATACCAATGTGATTATTGCAAACATTTATTCCCTTCAAAGGCATTATTAAAAGCTCATATCATGAAACAACATATGCTCGCGCTTTACTGCGACACTTGCCTCAAACCGTTCTATATTGAATCCGAATTCCATAGTCATAAGAAAGCAGgttgtcaaataaaaatatatccttgTGACATATGTTTGAGAGATTTCACTTCTTTAACTAGTTTGAAGTCACACATAGTTGTCCATTGTAATAGATATAGTTACGTGTGTGATATTTGCAATGACAAGTTTAAGCGTAAGAGCTCGTTGAAACGGCATATTAAACTTGTTCATGGGGCTGTATGA
- Protein Sequence
- MGISLKRLEVVLDRVKIYDCKDCLQGFLSHRDYLLHQVQHTHHQILNSRDRYYNKGYDSLKVNKCEECGLKFVLKSTLEAHLVVHAPYPHICHCGIGYYSSRDLDSHKKLVHENEINQKLSIPKENIKYKPQSKESNPKRKSNIKPKLKADVAFQQKSKFKKRKSRNSSNKDRMKIEEDEDANGDYVCPVCAKSYNQKDKLIRHLSNHCSSRDLKCVLCEKKFTQTGSIKLHLMRHAGIKDEECSYCDKKFADRYGRMTHERTHTGIKPYCCRFCAKTFSDQSAMMRHERIHTGDKRYKCQYCTKAFSDAGAAIRHRLTHANNGQTYTCDLCDRKFTTKFYLNHHMNIHKLEKNYQCDLCSKWFLLKQYLKIHISSVHFKYERYECDQCGKKFQVKQDLQKHFERKHDNIYYQCDDCDKNFKSHYGLDQHKRKVHRSRQFMCNDCPNQYTTKSELLRHIINKHFGIKCERCASHFRSNGELEKHKRKGCIKCLKCDRLFPSVALRTKHFKVFHVKQIKHDKCDICGKYYRGGCLNRHKAKFHGTLKEYQCDYCKHLFPSKALLKAHIMKQHMLALYCDTCLKPFYIESEFHSHKKAGCQIKIYPCDICLRDFTSLTSLKSHIVVHCNRYSYVCDICNDKFKRKSSLKRHIKLVHGAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -