Basic Information

Gene Symbol
JARID2
Assembly
GCA_035772565.1
Location
JAQQSE010000057.1:1826585-1835867[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 9.6 2.8e+04 -3.7 0.0 48 68 464 485 455 495 0.66
2 2 5.1e-15 1.5e-11 45.2 0.1 16 89 787 857 774 857 0.88

Sequence Information

Coding Sequence
ATGGACGCTGAGAGTCGTCGCAGCCACGTTGGATACGAATCTGACTGCGACGGTGAACTGCTAACCGAGAGTGCGTCTAACCACGAGCAGTCCGACAAATCATTTTGTCCGAGCACAGTCTTAGCAAAATATGATGACACTAACTCTTGCAGTAAACCTGATAATCACGTTCGAGACGAATCACCATCGACTAGTTACGCACATCAAAATAAGAACTCGAATTCAATATCGGTCGAACAGATATCGTCTAATCACAACACAGATACACTAGTTACCACACAAAAAAAGTCGAGGGACGACAATATTGAAAATCATATGCATTTAGATTTACAATATATGGatacaaaaaatagtattacATCACTCGAGAGAACTAAAGATTCGGGTAGAGAAGTGCATGATGTAGATATGCAGATAGAGAAGAATAGAGCAGAGATTAGTAGTTCGTGCCCCAGCAAAAGTTATTTGAATGCAAAGGATGTATTATCTGCAGCATCTAAAGAACAATTGAAAAATCGATGTAGAACGTGTGCGTCTTGCATTaacataagtaaattattacaaatcgcAAGTCTAGTTGAACAACCTTTAAGTATAAGCCAGGGAGAAACAAATAATGTTTACCAGTTCGATGGGAATGAAGATGGTAACAGTGCGAGTCAGTGTAAATATAGCGGAAGTCGTCCAGCTTCATTATGTTCACTATCGAACTCTAACTCGGTTCCCATCTATTTAGACATTATGTCGGATGAGTGCACCCACGTCATACAAATAATGTGGGATCACAAAAACGATAAGATGTTAAGAGCGAGGCTCGTGCCAAAGACTCAAGTAAACATTACCAATGAACTCTCATTAAACAGTCACGGGAATCTATTGGACCAATTTATAAACAGATTGAACGAGAGCAACAAATTTCGTACATGTAGACTCCCGAATAATTCAAATGAAGAGTACGATGAAATACTTCACAATGATGCCCAGTGGTGTAGCGAAACGTTTAAAACAGGTAAGAATCAAATCATTTCTTTACATAATATCAACAGAAATTTACCTGTTTTGACATCAAACCTTAATGCCGTAGGTCGCGAGAATAATGCTACATCGGCACCAGAACCGCTGCGCGCCGTTACCGatgaaaaacaaaacttaaatgAGCGCCCTGAAACTATAATCAGCAATGATGCAGTGACTTCTAACCAGACTAACCTTATAAAGGTGGACATACACAACACTGAACAACTTGCCTTTCAAAAACTTGGTTCAAATGTGGATATATTACAGGACGCAAACACCGTTTCAGAAGAACAACTTCCAGAACAGTTACTACCGAAAAAGTCTTCTCAGAGCAATCACCCTAAAAATGTCTCTCGCAATAATGAACCGACATCTGTTCATGATAATGAAGACCCTTGGAAAAACATTGATAATAATCTGTCGGTACCAATGGACACAAAGAATACGGTAGATAAGTCAAAAATTGAAAAGGAATCCTTTaaaaataggaaaagttacTTCAACTCCAGGTTTATTATGAACACTAAAGGTAAAcgtaattacataaataaaaagccAATTGGACAATCTAAACGTAAATCATCACGGCTTATTGCAAAAAAGAAGGAAATTGAACGTTCATCTAAAAGATTATTGAAAAGGGCAGAGAGTCGAACAGATTCTTTGACAACGTTTTCAACTTCCGAAAAGCCAAGCCTAATCAAACGCAAAGCCGTATCGAAACTTTTACCGATGGAAAAACGCCAACGCGCACCATCGTCCTCCTCGAGTACTACCAATCTAAACCAACCTTCTACTAGTAGAAGCAACGGCAGCGTCAGTGAGCTCTCGAGACAAAAAATGACTAGAAAAAGGCGTATATCGACTGCAAAAATCAAACTACCACGTAATGCTAATGCCGACTTGAAAACTCTCGAAAATTCTGACTCCGATTCAAGTTCGAGTGAAAGCTGTATACCCTTACATTGGACCATAACACCACGGACACCATTTGGGAATAAAGAAAACAAGCCTGTGGCTAGTAGTAGCAACAAGGAGGGAGGGCTCTCCACGAGAAACACTTTTCCGAGAGGATCTGAGAAAGCAGAGCTGGTCAATGCTCCAGTTTTTCATCCTACTAAAGCTGAATTTGCTGACCCTATATCGTACTTTGAAAAGATAATGCCAACGGCAAAAAAGTTTGGTCTGTGTAAAGTTGTGCCTCCGGACAATTTCAACCCGACATGTCACATCAAAGATGACATGCGATTTTCTGTGTCAAATCAGTACATAGCTCGGATGTACAGCCGATGGGGAGTCGCTCAACGAGAGATGTGCGCTATCAAAGTCAATTCCGCCATCCAAGGTGTAGTCTTCAACAAGGCGCCTTTGttGGACTGTATGGAAGTGAATCTCCTGAAACTGTATCATTTGGTGCAACACATCGGTGGTTTAAAGAAAGTAATCGAGAAGAAGCGCTGGACACGCATTGCCGAAGACCTTCGCGTCAATCAATGTTTAAACCCAGAGAGGAAACTTGACTACATTTACGTTAAATATGTTCTTTCCTATGATACTTTGACTAATGAAGAGCGTCAGAAAATGTTGCGTAAAGTCGAAAGCTGTTGGTACAAGTATAACACGAAGATGTTAGAGCGGGCGATGAATCCACTGCATGCCAAAAAGAAGATTCTCTGTGAGTCAGACTCATCCGACGACGAAGAGGAAGAGATGGACCGCTTTGTGGCTTCTGCTTTAGCTGAAGCTGAGGAATGCGTTGTAGATGGAAGGCAAATGAATCTAAGCATGTTTAAGAAGATTGCTGGCAACATGATATATGTGCACTTCCCAAACGTAACTCAGCCGAGTGTGGACGATGTCGAGAACGAGTACTGGCGCATAGTGCTGCTCGCGGCTGAACACGTGTGCGTTAACGTGGCTTCCGTCGACACGGGCGTTCAGGGTTACGGCTTTACAAAGAATAAGAATGACCCATATGGCAGACACCCTTGGAATCTTAAGGTTTTATGCCAAAACCCTGGTAATGTTTTGCGCTCTCTGAATTCGGTTCTGGGCGTGACAGCGCCCACACTGCACCTTGGCATGTGTTTCTCGTGCAGTTGTTGGCATCGCGATCCACACGGTTTACCCTGGATGGAGTACATGCATTCTGGACCAGGCAAGATTTGGTACGGTATACCCGATGAACAGAGCGATAACTTCCGTAAAGCTGTGGAGACGTTGTGCCCCACTTCGTACCGGAATAAGCCGATCTGGCTGCCGTCGGACATCACGATGATACCGCCGAACCTGCTCCGAGAGCACAACGTGTCGCTGTCGCGGGTGGTGCAGAACCCCGGGGAGTTCATCATAGTGTTTCCGAAAGCGTACTCCTGCTCCATAACGACGGGCTACACACAGTCTGAGAGCGCCTACTTTGCAACTAACTCGTGGCTCACGAGCGTCAACCAAATCTTTCAAGAATTACGGGAAAGCTGCGAGCCGACAGCCTTTTCCGTGGAACAGTTGTTGGTGAGCGTGGCTCGGGACCAACGCGTCAATCTGACCGTCTTACAGCAAGTTCACAACAACCTCTCGACAATCATATGTGACGAGCTCGCGTATCGGCAGGAGCTCCTCGAGAAAGGCGTCAGGATTGTTTACGGCGAGATACGCAATAAAGAACGACAACGTCGTGGGTGGAACTCGCGGAATGACGAGTGTCACATTTGCCGTTCCATCCTCTACTTGTCAAAGgtaatgGGCATAATAACGAAGAAGTGCCAGGTGTGTTTACAGCACGCGGTCACCCTGCTAAAGGTGAGGGGCAGTCAGGTCGATATCTCTCAGGTGGAAATGATACTGCCGTTTTCAGATGAGGAACTGAAAGATGTTGTTAGCAGCGTCCAGGAACGCCTCACACATTTCTAA
Protein Sequence
MDAESRRSHVGYESDCDGELLTESASNHEQSDKSFCPSTVLAKYDDTNSCSKPDNHVRDESPSTSYAHQNKNSNSISVEQISSNHNTDTLVTTQKKSRDDNIENHMHLDLQYMDTKNSITSLERTKDSGREVHDVDMQIEKNRAEISSSCPSKSYLNAKDVLSAASKEQLKNRCRTCASCINISKLLQIASLVEQPLSISQGETNNVYQFDGNEDGNSASQCKYSGSRPASLCSLSNSNSVPIYLDIMSDECTHVIQIMWDHKNDKMLRARLVPKTQVNITNELSLNSHGNLLDQFINRLNESNKFRTCRLPNNSNEEYDEILHNDAQWCSETFKTGKNQIISLHNINRNLPVLTSNLNAVGRENNATSAPEPLRAVTDEKQNLNERPETIISNDAVTSNQTNLIKVDIHNTEQLAFQKLGSNVDILQDANTVSEEQLPEQLLPKKSSQSNHPKNVSRNNEPTSVHDNEDPWKNIDNNLSVPMDTKNTVDKSKIEKESFKNRKSYFNSRFIMNTKGKRNYINKKPIGQSKRKSSRLIAKKKEIERSSKRLLKRAESRTDSLTTFSTSEKPSLIKRKAVSKLLPMEKRQRAPSSSSSTTNLNQPSTSRSNGSVSELSRQKMTRKRRISTAKIKLPRNANADLKTLENSDSDSSSSESCIPLHWTITPRTPFGNKENKPVASSSNKEGGLSTRNTFPRGSEKAELVNAPVFHPTKAEFADPISYFEKIMPTAKKFGLCKVVPPDNFNPTCHIKDDMRFSVSNQYIARMYSRWGVAQREMCAIKVNSAIQGVVFNKAPLLDCMEVNLLKLYHLVQHIGGLKKVIEKKRWTRIAEDLRVNQCLNPERKLDYIYVKYVLSYDTLTNEERQKMLRKVESCWYKYNTKMLERAMNPLHAKKKILCESDSSDDEEEEMDRFVASALAEAEECVVDGRQMNLSMFKKIAGNMIYVHFPNVTQPSVDDVENEYWRIVLLAAEHVCVNVASVDTGVQGYGFTKNKNDPYGRHPWNLKVLCQNPGNVLRSLNSVLGVTAPTLHLGMCFSCSCWHRDPHGLPWMEYMHSGPGKIWYGIPDEQSDNFRKAVETLCPTSYRNKPIWLPSDITMIPPNLLREHNVSLSRVVQNPGEFIIVFPKAYSCSITTGYTQSESAYFATNSWLTSVNQIFQELRESCEPTAFSVEQLLVSVARDQRVNLTVLQQVHNNLSTIICDELAYRQELLEKGVRIVYGEIRNKERQRRGWNSRNDECHICRSILYLSKVMGIITKKCQVCLQHAVTLLKVRGSQVDISQVEMILPFSDEELKDVVSSVQERLTHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-