Amun009037.1
Basic Information
- Insect
- Anorthoa munda
- Gene Symbol
- -
- Assembly
- GCA_945859655.1
- Location
- CAMAOM010000132.1:470632-511715[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00034 0.041 15.5 3.1 1 23 225 247 225 247 0.99 2 16 0.18 21 6.9 0.3 3 23 256 277 255 277 0.96 3 16 2.7 3.3e+02 3.2 3.3 1 23 281 303 281 303 0.96 4 16 0.046 5.5 8.8 2.6 1 23 308 331 308 331 0.95 5 16 0.024 2.9 9.7 0.5 1 23 335 358 335 358 0.96 6 16 0.13 15 7.4 1.2 1 19 370 388 370 390 0.97 7 16 0.00094 0.11 14.1 1.0 2 23 403 424 402 424 0.96 8 16 0.00078 0.093 14.3 1.7 2 23 429 451 428 451 0.96 9 16 1.7 2.1e+02 3.8 0.5 2 11 471 480 470 484 0.82 10 16 1.7 2.1e+02 3.8 0.5 2 11 520 529 519 533 0.82 11 16 1.7 2.1e+02 3.8 0.5 2 11 569 578 568 582 0.82 12 16 1.7 2.1e+02 3.8 0.5 2 11 618 627 617 631 0.82 13 16 2.5e-05 0.003 19.0 0.3 2 23 667 688 666 688 0.97 14 16 0.014 1.7 10.4 0.8 1 23 694 716 694 716 0.97 15 16 2.6e-05 0.0031 19.0 2.0 1 23 722 744 722 744 0.94 16 16 1.1e-06 0.00013 23.3 2.2 1 23 750 773 750 773 0.98
Sequence Information
- Coding Sequence
- ATGATTGCTGCACTGCGTGTCGCGGGTTCGATTCCCGCATGGAACAAATATTTGTATGACCTACAGATAGTTGTTCCAGCTCTGGGTGTTGTGTATGTGTCTCCGGCTGACAACTACCCACAATACTTGTGCAGTTACTGCTGTGCGTTGCTACTCAAGTGCGAAGCGTTCAGGGAGAGATGTCGCCGGGCACAGGAACTGATGAAGTACGCTGAAATGAAGAGTAGCCTTCTGACGACTTCCCAGATCCACTCGATAGCTGTGTCGCACCACACTGGTTTGCCCCTTACGGTGTCCTCACCGGAATCCGCCTGCATCACAGAGGTGCTGGTCAAGAGCGAGGATGAGCACCCTGTCGCTGACTTCGTACTCTTCAAGGAAGAGCTGGATTTCAGTGATGAAGAGCCTCTGGCTAACAAGGTAAAGAAGAAGGATCAAAATCATGCTATAGAAGTAGAAGTTCCTGCAATAGAGAAGGAAGATGAAGATGATGGAGAGTTTAAAGAGTTTGAGGATGACAGGACGGACTTTGATGGCAATGTGTCTAACTTGGGATGTGACGCCGAGTTCGACCTTCCTAGTAACGATATTGAGGTAATATGTTTAACGGTAGAAGATCAACTTAAAGAAGTTTTGGAGAGAAAGGAATCTTACAATTACATCAACTCGTTCTACAAATGTGAACATTGCTATAAGGGTTTCATTCAAGACGGGACTTATAAGAATCATATGTTGCGACATGATCCGTCTTACGGCAAAGAAATCTGTCCAATATGCAAAACAAGATGGCCGAATCTCCGTTCTTTAAAATCCCACACGACCACAGCCCACGAGAGAAAATACATTTGCAAACTATGTAGCCACGTCTCCAAAAGTAGTCACAGGGCGAAGGAACACCTCCAATGGCATAAAGGTCATAAGTTCACGTGTAAGGTGTGTGGGTCTGTGTTCTCTAAGTCTACTAGCCATTTGACCCATTTGAGGCTGCAGCACCCGACGAAGTTCTGTTGTGAGGTCTGCGGAGAGAGTTTCCTGGGTGAAATTGGACTGAATATGCATATGAAGAAGACACATAAGGGGAACGAGAAAGTCAACTTAAAGCCTCAATTCAAATGTGCAGTGTGCGAACAGTACTTTAAAACTATGGAAGCCTTAAAACTTCACTGTAATAGCTATGACAACGGCATTTGTGACGGCAGTCTATGCTCCTGTTTCCAATGCGGTGAGAACCTTCCTACACAAGATGCTCTCAGAGATCACCTCAAGACTCACGATGTTGGCGTCAAATGCGAAGAGTGCAACAGGACCTTTGCCCACGAGCGCTCGTTCTCCATCCACTACCAGCGAGTACACCTGGGCATCAAGCTGAAGCATCACCCGCCCAGGGACAAGAGCAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGGACAAGAGCAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGTCCATATTACATCAAGCTGAAGCATCACCCGCCCAGGGACAAGAGCAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGGACAAGAGCAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGTCCATATTACATCAAGCTGAAGCATCACCCGCCCAGGGACAAGAGCAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGGACAAGAGCAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGTCCATATTACATCAAGCTGAAGCATCACCCGCCCAGGGACAAGAGCAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGGACAAGAGCAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGTCCATATTACATCAAGCTGAAGCATCACCCGCCCAGGGACAAGAGCAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATATCGAACGCTGCTTTGGTGTATCATCAGCGTACCCACACAGGAGAGAAGCCGTTCCAGTGTATTGAATGTCCGAAGAAGTTCAGTATATTTCAAAGATTACAGATCCACGTGCGCACGCACACGGGCGAGAGACCGTTCAAGTGCTCCACTTGTCCGAAGGCGTTCAAACACAAGGCGGCGCTGAACAGGCACGACCGGGTCCACTCCGGGGCGAAGCCCTACCAGTGCGCTCACTGCGGCAAGACGTTCTCTCAGTCGAACTCCATGAAGCTACACGTGAGGACCGTACATCTCAAGCTACCCGCACCGTACAGGAGTCGTCGAGGGAACCAGCTGGACATGCTGGAGAGTGACGTCAGCTGA
- Protein Sequence
- MIAALRVAGSIPAWNKYLYDLQIVVPALGVVYVSPADNYPQYLCSYCCALLLKCEAFRERCRRAQELMKYAEMKSSLLTTSQIHSIAVSHHTGLPLTVSSPESACITEVLVKSEDEHPVADFVLFKEELDFSDEEPLANKVKKKDQNHAIEVEVPAIEKEDEDDGEFKEFEDDRTDFDGNVSNLGCDAEFDLPSNDIEVICLTVEDQLKEVLERKESYNYINSFYKCEHCYKGFIQDGTYKNHMLRHDPSYGKEICPICKTRWPNLRSLKSHTTTAHERKYICKLCSHVSKSSHRAKEHLQWHKGHKFTCKVCGSVFSKSTSHLTHLRLQHPTKFCCEVCGESFLGEIGLNMHMKKTHKGNEKVNLKPQFKCAVCEQYFKTMEALKLHCNSYDNGICDGSLCSCFQCGENLPTQDALRDHLKTHDVGVKCEECNRTFAHERSFSIHYQRVHLGIKLKHHPPRDKSNKVPWVCEICGKKCIGQEQQGALGVRDLRQEVHSPYYIKLKHHPPRDKSNKVPWVCEICGKKCIGQEQQGALGVRDLRQEVHSPYYIKLKHHPPRDKSNKVPWVCEICGKKCIGQEQQGALGVRDLRQEVHSPYYIKLKHHPPRDKSNKVPWVCEICGKKCIGQEQQGALGVRDLRQEVHSPYYIKLKHHPPRDKSNKVPWVCEICGKKCISNAALVYHQRTHTGEKPFQCIECPKKFSIFQRLQIHVRTHTGERPFKCSTCPKAFKHKAALNRHDRVHSGAKPYQCAHCGKTFSQSNSMKLHVRTVHLKLPAPYRSRRGNQLDMLESDVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -