Amun034497.1
Basic Information
- Insect
- Anorthoa munda
- Gene Symbol
- -
- Assembly
- GCA_945859655.1
- Location
- CAMAOM010001173.1:1159255-1168097[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.57 68 5.3 0.5 2 23 28 50 27 50 0.91 2 21 0.35 42 6.0 0.0 2 23 75 97 74 97 0.94 3 21 0.56 67 5.4 1.5 2 23 120 141 119 141 0.95 4 21 2.7e-05 0.0032 19.0 1.5 2 20 146 164 143 166 0.88 5 21 3.5 4.1e+02 2.9 0.2 3 13 205 215 203 216 0.87 6 21 0.00046 0.055 15.1 0.2 2 23 252 274 251 274 0.93 7 21 0.12 14 7.5 0.2 3 23 301 322 299 322 0.94 8 21 0.077 9.2 8.1 0.9 2 23 345 366 344 366 0.96 9 21 2.4e-06 0.00029 22.2 3.6 1 23 370 393 370 393 0.95 10 21 0.64 77 5.2 0.4 3 19 400 416 399 418 0.89 11 21 0.00015 0.018 16.6 2.0 3 23 475 496 474 496 0.98 12 21 5.7 6.8e+02 2.2 0.0 2 23 521 543 520 543 0.90 13 21 0.00033 0.04 15.5 0.2 2 23 567 588 566 588 0.96 14 21 0.00037 0.044 15.4 0.8 1 21 592 612 592 613 0.96 15 21 0.9 1.1e+02 4.7 0.1 1 23 654 677 654 677 0.94 16 21 0.47 56 5.6 0.4 2 23 703 725 702 725 0.95 17 21 0.0019 0.22 13.1 0.6 2 23 749 770 748 770 0.95 18 21 0.00027 0.033 15.8 0.0 1 23 774 797 774 797 0.97 19 21 0.5 60 5.5 0.5 1 23 801 824 801 824 0.97 20 21 0.00089 0.11 14.2 1.2 1 23 863 886 863 886 0.96 21 21 0.00087 0.1 14.2 0.4 1 23 896 919 896 919 0.95
Sequence Information
- Coding Sequence
- ATGCACATCGCTAAAAGGAACGCGCAGACCGTTATACTATATACAACAGCTTATCCGTTTAGACTCCCGGAGAGTTCCATCGTATGCGTATACTGCTGCGAAAGCTTTGACGACCCTCCTCGCTTCAGGAAGCATATGGATGACGACCACGGGGCGGTCAACGTCAGGGTCGCATTCTCACACCTCCACGAAGGATACATTAAGGCTGACTGCACCGATTTACGCTGCAGAATATGCCTTGAGACCTTCAACAATATCGAAGAGGCAGCCGTCCACTTAAACATTGTCCACAAACAAAATATTGACTTGAATCACGATATCGGTCTCCAGCCTTTTAACATACAAACTGACAAGTTATCCTGCGCTGTATGCCACGACAAATCGTCCAACATACGGAGTTTGAGCCGTCATATCCAAAAGCACTTCTTCCAATGCACTTGCGAACTTTGTGGGAAATCTTTCGCGTCGTCCACCTCCTTGCAAAAGCATTTAGAGTTCTCCTGTCCTTTTGTACCGAAACAGAGGAGATGTAGGAAGTGCAAAACTGTTTTATTCTCGACTGAAGATCAGAGGAGACACTTTGAGGTGTCCAGACAGTGTAGACAGCACTTATGCCCTGTTTGCGGCGACAGATTCAGCACTTGGAAGATTAAGAGGAACGTGATGCGTCCGTTGTCCGTCGCGCGACGCAATGCGGAGACTATCGTCCTGAACGCCACGGTTTACCCCTTCCGTCTGCCCGAAACATCCCTCATGTGCGTATACTGTGGCGAGTCATACACGGACCCCACGTTGTTCAGAAAACATGCGAAGGAAGAACACTCCTCCTTCACAGTCCGAACAGCTTTCTATCACTGTTCCTACGAAAATTACCTCAAAATCGATACCACAGAAATGGCCTGCAGAAAATGCTCGGAATCCTTCGCCAAAATCGACGATATCGCACGCCATTTAAACGAGAAACACGACGAAAAAATCAACTTTGACTTCCAGTTAGGATTGCATCCCTACAAATTTTCGCAAGACGCGATCATGTGTGGAGTCTGTGATCTAAACTTCCCCTGTTTGAGACAACTCAGTCGGCACATGTCTTCTCACTTTCTGAACTTCACTTGTGATACGTGTGGCAAGTCTTATACAACGAATAGTTCTTTGAAGCATCACATACAATTCTCACATATAGCTGATGAAAGAATCTGCAGGAAATGCAAACAAACGTTTAGTTCTTTAGAAGCTAAGAGGGAGCATACTGTCAATACTCCCAGCTGGACCACATTGGAAATTCACGGACGTAGTGAGACTGAGAACGAAACAAAAAAGAAAATAGTCCTTGTTTACCAGACGCCGCAAAGGCGTAACGCTGAAATTATCCTAACTTACTCTACCGCTTACCCTTTTAAAACACGCTTTAGTCAAATACTATGCTCGTACTGCCACGAAGAGTTTAACACCCTAACAGATCTCAGATACCACATGAAAACAGAACATTTAAATTCAGGTTTCAAGAACGTATTCTACAGAGCAAGGGACAACTTAATAAAAATAGATATCACTAATCTGAAATGTAAAATTTGCGCTGAAGAAATCCAAGACGTGGATGGTCTTATGAGTCATTTGTATAGGGAACATAATAAGCCTGTGAAATTCAATGCCAATTATGGCGTCCTACCTTATAAGCAGACTTCTGATAACCATTGGACTTGTGTGTATTGTAACAAAGTCTTCATATCTTTCATAGCTTTCAATCGCCACATAGTCACTCATTTCATGAACTACAGTTGTGACAAGTGCGGTACAACCTTCGTCTCGGATTACGCTTTGAAAGACCATCATCGGCAAGTCAAGTGCTTCCGAACTGCTTATAAAGCTAGAAATGGAAGGGTCTTAAAACCTAGATCCAACGCAGAAATAATTCTACAGTGTTCTACCGCCAGTCCTTTCAGGACATGGAAAAGTAATTTCAATTGTGTGTTTTGTAGAGTCCAAAGTAATGATCCGAGCGGTCTTCGTATGCATGTCGTTACGATTCACGCGAATTATGACGTCAAAGCAGCTTTCTATAAGAAACTAGGGAAAGACTTCCTCAACGTTGACATAACTGATCTCCAGTGTAAACTGTGCTTCATGTCTATAGATTCCTTCGACAGTTTAATTTATCATTTAAAGAACGATCACCAGCAGCCGATCAATTCAGACGCTCAGATAGGCGTCCTACCTTTTAGACTTAACGATGGCTCAATATGGAAATGCACGATATGTCCAAATGAGTTTAAAGATTTTGTGTCGCTTAAGAAGCATACCTCTGAACACTTCCAAAACTACGTTTGTGATACGTGTGGCGAAGGGTTTATAACAGAATCTGCAATGATAGCTCACACTAAAATACCGCACGAGAACAAATACAACTGCAGCAGATGTATAGCCACGTTCTCTTCGCTTGACGAAAGGAATATTCACGTGAAAACACAGCACACATCATTGCCATACGTCTGTGTTTACTGCAAAGATAAACCACGCTTCGCTAACTGGGAGGTTCGCAAAAAACACTTAATGGCAGTACATAACTACAAGACAGGAGCTGATAAATACGACTGTGCGACATGCCAAAAGTCTTTCAAGACGAGATCGGGGAAGTACAACCACATGGCGAGAGTACATCGAATAAAAAAAGACACGGAGCTCAGCTACCCATGTCCAAGTTGCCCCAAGGCATTTACGACGAAACTGTTCTTGGACAAACATGTGGCCAAAAAACATTTTGATGTTTGA
- Protein Sequence
- MHIAKRNAQTVILYTTAYPFRLPESSIVCVYCCESFDDPPRFRKHMDDDHGAVNVRVAFSHLHEGYIKADCTDLRCRICLETFNNIEEAAVHLNIVHKQNIDLNHDIGLQPFNIQTDKLSCAVCHDKSSNIRSLSRHIQKHFFQCTCELCGKSFASSTSLQKHLEFSCPFVPKQRRCRKCKTVLFSTEDQRRHFEVSRQCRQHLCPVCGDRFSTWKIKRNVMRPLSVARRNAETIVLNATVYPFRLPETSLMCVYCGESYTDPTLFRKHAKEEHSSFTVRTAFYHCSYENYLKIDTTEMACRKCSESFAKIDDIARHLNEKHDEKINFDFQLGLHPYKFSQDAIMCGVCDLNFPCLRQLSRHMSSHFLNFTCDTCGKSYTTNSSLKHHIQFSHIADERICRKCKQTFSSLEAKREHTVNTPSWTTLEIHGRSETENETKKKIVLVYQTPQRRNAEIILTYSTAYPFKTRFSQILCSYCHEEFNTLTDLRYHMKTEHLNSGFKNVFYRARDNLIKIDITNLKCKICAEEIQDVDGLMSHLYREHNKPVKFNANYGVLPYKQTSDNHWTCVYCNKVFISFIAFNRHIVTHFMNYSCDKCGTTFVSDYALKDHHRQVKCFRTAYKARNGRVLKPRSNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSGLRMHVVTIHANYDVKAAFYKKLGKDFLNVDITDLQCKLCFMSIDSFDSLIYHLKNDHQQPINSDAQIGVLPFRLNDGSIWKCTICPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCIATFSSLDERNIHVKTQHTSLPYVCVYCKDKPRFANWEVRKKHLMAVHNYKTGADKYDCATCQKSFKTRSGKYNHMARVHRIKKDTELSYPCPSCPKAFTTKLFLDKHVAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -