Agla001089.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- stc
- Assembly
- GCA_000390285.2
- Location
- NW:61957-64286[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 3 1.5e+04 -4.3 3.0 15 19 400 404 399 407 0.68 2 6 1.7 8.3e+03 -3.3 0.2 4 10 433 439 433 439 0.83 3 6 6.1e-06 0.029 14.1 13.0 4 18 448 462 446 463 0.93 4 6 1.2e-10 6e-07 29.1 11.7 1 19 499 517 499 517 0.98 5 6 0.5 2.4e+03 -1.6 1.4 5 10 546 551 540 551 0.86 6 6 6.8e-11 3.3e-07 29.9 13.8 1 18 557 574 557 575 0.98
Sequence Information
- Coding Sequence
- ATGTCGTTCCACAACAATCAattgaatatgaattttaattcaaattatgaaGCTCATACTTACAACAGTGCTCAAAGTTCGGAATTCTCCAATTTGAGAGAAATACCTAATCAAGTTGTTGATGTGAGATACTCTACTTTAGAGCCTACGGCTCAAGAATTTCATCCTATGAATCAAACGACAGATTCCTCAAATGGAGCTATCAAGAAAACATCTCGAAATGAAAAGAATCAGTATAAAGGCAAAGAAAAAAACAGACGTAGTTGGTATGGAAGTGGTAGAACATTTAATGGTTCGAAACGTGAATACTTTAATAGAAATGAGAGTAGTAAAAACGAAGAACAAAATAATCCTCAAGATTGTGCAAGTTTTTCAGATAAATCAAATCAAGATTTATATGGTGAGGATAATTTACCTACCCATAGTCACAATTCCTCCAAatttcagaaagaaaaaaattcaggcCACTCACAATCTAGACATTTTGAGAGAAATCTAGAAGCAAGTAGTAAACAATAtggaaatagaaataaatataaagaaaatacaaaGTCAGATTACCAAACATCCAATGTTGATAGTTTCCGATCATATGAAAATTCAAATAGGAATTATAGAGGAAGTAgtagaagttatgacaaattttataaaattaataataaatctgaaaaaagtAATAACTATTATGAAAAATCTGGAGGAAATGGTACATATGATAAATATAATCGAACTGATAACTATTACGATAGTTCAGGCAGAAGTTATACCAATAATTATTCTTATaggaaaaatagtaataattctTTTGAAAGGAGTAATATTGATCAGTTTGAAAATGATAGTTATAAGACACAAAAGAATGAGTATCACATTGATGAGTTTAAAAGTGGTTTTAGGCCATATGTtggtaaaaatgataaatacttAGAAGGAAAAATACGAAAAGATTGGAGGATGCCAACTAATTCCAATAAGCATTCCAAGGATTCTGCAACAAAGATTAAGAAGTTTGATGCAGCATCCCAAAGGGAAAGGTTAGAAGAAATGTTAAATCGCCGACTTCTAGAATGCCTTGTATGCTGTGAAAAAATAAAGCATACTGATAAAGTCTGGAGTTGTTCCCAGTGTTATcacattttacatttacattgtgTGGCTGCTTGGGCAAAATCCTCCAAAATGGAAAATGGTTGGCGTTGTCCAGCATGTCAAAATATGTGCACCGAAGTTCCAAACCAGTACAAATGCTACTGTGGCAAAACAGTTGATCCTAAATATACTCCAGGAGTTATTCCTCACGGATGTGGAGAcatctgtttaagaaagggacGAGCCTGTGATCACAAATGCACCATCCTTTGCCATCCAGGCCCTTGCCCTGATTGTGACGTAATGGTTGCCAAATCTTGTGGATGCGGTCTTACAAAACCTGTCGTAAAATGTAGCGCTGATGTAGAAATAGTATGTAATTCCATTTGTAATAAGATTTTAAACTGTGGCATACATAAATGTATCTCTGTATGTCATCCTGGAGATTGTAGCCCATGCTCCGAAAATATAATACAAGAATGTTATTGCGGAAAGCAAGGTAGAAAAGTATTATGTTCGGCTGAATTTTGTGGTAGAACCAAATATACTTGTGAAGATATATGTGAGAAGATTTTAACTTGTGGCAATCATAAATGTCAGAGAATGTGCCACGAAGGTCCATGCGATCCTTGTGCCAGAGATGTTAACCTGGTGACAACTTGCCCTTGTGGTAAAACTCCATTAGATAGAAGCAGAAGTTCCTGTTTGGATCCTATTCCTTGCTGTGATAAGGTAGGTATATCAATTTACAAGAAAAACGAACCAAATTCAAGA
- Protein Sequence
- MSFHNNQLNMNFNSNYEAHTYNSAQSSEFSNLREIPNQVVDVRYSTLEPTAQEFHPMNQTTDSSNGAIKKTSRNEKNQYKGKEKNRRSWYGSGRTFNGSKREYFNRNESSKNEEQNNPQDCASFSDKSNQDLYGEDNLPTHSHNSSKFQKEKNSGHSQSRHFERNLEASSKQYGNRNKYKENTKSDYQTSNVDSFRSYENSNRNYRGSSRSYDKFYKINNKSEKSNNYYEKSGGNGTYDKYNRTDNYYDSSGRSYTNNYSYRKNSNNSFERSNIDQFENDSYKTQKNEYHIDEFKSGFRPYVGKNDKYLEGKIRKDWRMPTNSNKHSKDSATKIKKFDAASQRERLEEMLNRRLLECLVCCEKIKHTDKVWSCSQCYHILHLHCVAAWAKSSKMENGWRCPACQNMCTEVPNQYKCYCGKTVDPKYTPGVIPHGCGDICLRKGRACDHKCTILCHPGPCPDCDVMVAKSCGCGLTKPVVKCSADVEIVCNSICNKILNCGIHKCISVCHPGDCSPCSENIIQECYCGKQGRKVLCSAEFCGRTKYTCEDICEKILTCGNHKCQRMCHEGPCDPCARDVNLVTTCPCGKTPLDRSRSSCLDPIPCCDKVGISIYKKNEPNSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -