Agla007450.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:1072-8219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.8 87 3.6 1.3 2 11 254 263 253 267 0.84 2 12 0.0006 0.018 15.2 2.5 1 23 291 313 291 313 0.98 3 12 0.0012 0.037 14.2 2.8 1 23 322 344 322 344 0.98 4 12 0.00066 0.02 15.0 4.6 1 23 353 375 353 375 0.98 5 12 0.2 6.2 7.2 5.2 1 23 384 406 384 406 0.99 6 12 0.00033 0.01 16.0 3.0 1 23 415 437 415 437 0.98 7 12 0.002 0.062 13.5 4.5 1 23 446 468 446 468 0.98 8 12 0.15 4.7 7.6 4.2 1 23 477 499 477 499 0.99 9 12 0.97 30 5.1 0.9 5 23 512 530 511 530 0.95 10 12 0.0057 0.17 12.1 2.3 1 23 539 561 539 561 0.97 11 12 0.006 0.18 12.0 2.7 1 23 570 592 570 592 0.97 12 12 8.3 2.6e+02 2.1 0.5 1 10 601 610 601 613 0.87
Sequence Information
- Coding Sequence
- ATGTGTAAAGATTGTTCACTAAAGACACTGGAGGCATTTAAATTTAAGTTGATGTGCCTCTATACCGATACTACCATAATTCCTTATGTTAATGTTGAAACAGGATTTTCAGTTGACTTAAGAGAGATTTAtgcaaaagaaaaagaaaataaacaattagaaaACTTGCAATTAAACGACCTATTACACGAACATAAAGTTTGTAGGTTATGTATGCAGCTAATAGAGGGTGAATTTATATTGATACATGGAGTAGAAGCTGATATGATAGAGATATATATTCCAGAAGTAAAACTCAATATTGTCAAAGATCCTGTCATGTGCAAGCAATGTTTTGTATCCCTTGGCACCCacagcaattttttaaagaactgcTTGGAAGTACAGAAAAAAATGAAGGATGTTAATAATGAAGGAGTACCTGGCTATGTGTTCTGGGGGCCATCATTAGATTCCTGCATTAAAACTGAAGCAGTCGTTATAAAATCTGAAGAAAGTGAACAAGAAAAAGagttgtttaaaattgactctACTGCAATAAAACTAGAAGATAAAGAAATATCAATTAAAACTGAGATTAACGACATAAAATCAGAAGATGAAGATGGAGATAATAACTTGTCTCTGGACACTTCATTCCATGGATTGGGTCAGGAGGACATTTCTGCAACAAACGAATACAACTGTGCTCcagaaataagtttaataaaaccAAATAAGGAAGCTgtgtataaaaatcaatttgaaaCACAGACGTCCAAGTGTGACATTTGTGGACGTGCATATGATAAATGTGATTGCGAAACTAAACTTGACGAGAATATAAGAAAACATCAGGTTATACTTGAAGACTCTTCAGAATTGCAGTTGTACAAATGTGCCATGTGTGAATATCAGAGCAAAAACAAGAAGAATTTTACACGCCACCAGTTAGTGCACAAGGATTCCTCAGAAGTACGTTTGTACAACTGTGATCTGTGTGATTTTACATCCAAATACAAGAACACTCTTAACCGCCATCAGTTGAAACACGCAAACCACTCAGAAGTggaaatgtacaagtgtgatttATGTGATTTTACCACCAAATATAAGAACAATCTGAAGCACCATCGTTTGATACACACGGATCCCTCAACAGTGCAAACATACAAGTGTAGTTTTTGTGAATTTACATCAAAATTTAAGTACAAAGTAAAGAATCATCAGTTGAAACATGCTGACCCTTCGCAAGTGCGAATGTACACATGTGAGTTGTGTGACTTTACAACCAAATATAAGAACACTCTTAATCGCCATCAGTTGAAACACGCAAACCACTCAGAAGTGGAAATCTACAAGTGTGATTTATGTGATTTTAACACTAAATATAAGAACAATCTGAAGCACCACCGCTTGATACACACAAATCCCTCAATAGTGCAAATATACAAGTGTGATTTTTGTGAATTTACatctaaatttaattacaaagtAAAGAACCATCAGTTAAAACATACTGACTCTTCGCAAGTGCAAATGTATACTTATGATTTATGTGACTTCACAACCAAATACAATAGGACTTTTAACCTTCACCAATTAAAACATTTGGACCCTTTGCAAATACGATTGTACACATGTGAGTTGTGTGATTTTAAGTCCAAGTATAAAGACAGTCTTAGGACCCATAAGATAAATCACATGGACCCTTCAGAAGTTCAGTTGTACAAGTGTGATTTGTGTGATTTTGAGACTAAATATAAGAACAGTCTTAAGAACCACTACTTCATACATGCTGACCCCTTAAAAGTACCAGTGTACAAGTGTGATTTGTGTGATTTTACGACCAAAATTAATCAGATTTAA
- Protein Sequence
- MCKDCSLKTLEAFKFKLMCLYTDTTIIPYVNVETGFSVDLREIYAKEKENKQLENLQLNDLLHEHKVCRLCMQLIEGEFILIHGVEADMIEIYIPEVKLNIVKDPVMCKQCFVSLGTHSNFLKNCLEVQKKMKDVNNEGVPGYVFWGPSLDSCIKTEAVVIKSEESEQEKELFKIDSTAIKLEDKEISIKTEINDIKSEDEDGDNNLSLDTSFHGLGQEDISATNEYNCAPEISLIKPNKEAVYKNQFETQTSKCDICGRAYDKCDCETKLDENIRKHQVILEDSSELQLYKCAMCEYQSKNKKNFTRHQLVHKDSSEVRLYNCDLCDFTSKYKNTLNRHQLKHANHSEVEMYKCDLCDFTTKYKNNLKHHRLIHTDPSTVQTYKCSFCEFTSKFKYKVKNHQLKHADPSQVRMYTCELCDFTTKYKNTLNRHQLKHANHSEVEIYKCDLCDFNTKYKNNLKHHRLIHTNPSIVQIYKCDFCEFTSKFNYKVKNHQLKHTDSSQVQMYTYDLCDFTTKYNRTFNLHQLKHLDPLQIRLYTCELCDFKSKYKDSLRTHKINHMDPSEVQLYKCDLCDFETKYKNSLKNHYFIHADPLKVPVYKCDLCDFTTKINQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -