Agla007515.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:45019-63294[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.045 13.9 4.0 1 23 273 295 273 295 0.99 2 13 0.011 0.35 11.1 5.5 1 23 331 353 331 353 0.98 3 13 3e-05 0.00093 19.2 1.9 1 23 382 404 382 404 0.98 4 13 0.12 3.6 7.9 6.2 1 23 413 435 413 435 0.98 5 13 0.0099 0.3 11.3 2.6 1 23 444 466 444 466 0.98 6 13 0.00066 0.02 15.0 3.3 1 23 475 497 475 497 0.98 7 13 0.15 4.6 7.6 4.2 1 23 935 957 935 957 0.99 8 13 0.0011 0.035 14.3 1.7 1 23 986 1008 986 1008 0.98 9 13 0.04 1.2 9.4 1.7 1 23 1017 1039 1017 1039 0.98 10 13 4e-05 0.0012 18.8 2.5 1 23 1048 1070 1048 1070 0.98 11 13 0.00028 0.0085 16.2 2.6 1 23 1079 1101 1079 1101 0.98 12 13 0.1 3.2 8.1 6.1 1 23 1110 1132 1110 1132 0.97 13 13 0.31 9.6 6.6 1.8 1 23 1141 1163 1141 1163 0.96
Sequence Information
- Coding Sequence
- atgcaagCAACAATCGTGGAAGAGACATTTTGTAGGCTGTGCCTAAATACTATAAGGGATTCAAATTGCCGGGTGATAGAAGAAGTCATAAGGGatattctaaaaattgttttgccGGATGTGAATTTGGAGGAGAAAGTTACACATGTCATGTGTGCAACATGTTCCGTAAAATTATTTgctgcttttaattttaaatcagtaTGTATGGATACGGAGGATTTAATTTTTCCTCACATTACTGCCAGTAAAATATCAGTGATCGATTTAAAGGAAGTTTATCTAAAAGAGAAGGGAAATATTCAGTTAATCGATGCATCAGAAGATTGGAGAATCTGCCGATTATGTTTTCAGTCGGTAACTTACGGATTTGTGGCATTAAATGAAGTGGATGTTGACGTAATCGATACATATATACCACAGGTTaacATCGGTGCTACCAGGGATCCTGTTATATGCACAACATGCTTTGATTCGCTTTGTACCCATGGCAATTTTTTACAGAACTGTATTGATGCACATGAGAAATATACAAACGTCGATAAACAGTCTTACATTAAAACtgaagaaattgaaataaaaccgGAAGATCATCAGGACTGCGACACGCTACAGCTGACCTCCGATGATGAATCATTGGAGAAGAGTGACTCTAAATGTACAGAAGAGGATGGATGTAGAGCAGTGAACAAATATAATACGAAATCCAAGAAGGAGCGCAAAGTATCatacaaatgtgataaatgtatttatgaaaCTGAAAGCGAGAGGTGTTTTACCGCACACTGTGAGAGACACAAAAATGATTATGTAGTGTATAAATGTGAGTCATGTaagtataaaactaaaaataagaaattacttcAAAGGCATCTGTTGAGGCATAAAAGCATTTCAAAAATACGTATGCACCAGTACGAATCATGTAATTACGAGACAAAGTGCAGATCTAACCTTGCTGAGCATCAGGTGAAACACAAAACACAATTGTACAAGTGCAACTTCTGTGATTTCAAAACAAAACGGAGGACCAATTTTAATAGTCATTACATAAAACACAAAGACTCAAACAAATGTGATGAATACGATTATAAAACTGAATGCAAGTCATTGCCTCTTAACGACACTCCACAGCTGCGTATTTATAAATGCAATGGTTGCAACTACGAATCAAAGGATAAGAGTAATTTCAACAAACATCAGTTGgtgcataaagatccttctcaggtccaaatgtacagatgtaacGACTGCCACCACGAAAGTAAGTACAAGAATGCTATCAAacggcaccaactgaaacacgAAGATCCGTCTCAGGTCCAAATATACAGCTGTAATGACTGCAATTACACAGCTAAGTACAAGAATAATATCAAACAGCATcgactgaaacataaagatccttcgcagattcaaatgtacaggtgtaacgactgtgaTTACGAAACTAGATACAGacgttatttaaaacaacaccaactgaaacataaagatcctttgcTGGTTCAAACGTataggttggaaatggtaaaagggcttataataaacctNGTGCTACCAGGGATCCTGTTATATGCACAACATGCTaatATCAATACTACCAGGGATCCTGTTATATGCACAACATGCTGTGATTCGCTTCGTACCCAtggcagttttttaaaaaactgcctTGATGCGCaggaaaaatatacaaatgtcGATAAACAGTCTTACGTTAAAACTGAGGAAATAGAAATAAAACTGGAAGATGATCAGGTTGCaagggaaaaatataaaaatgtcgaTAAACAGTCTTACGTTAAAACTGAGGAAATAGAAATAAAACTGGAAGATGAAGGCAGGTTGTGTCTAAATACTATAAGTGATTCAAATTGCCAGGTGATAGAAAAAGACATAAGCGATATTCTGAAAATTGTTTTGCCGCATTTGAATTTGGACGAAGAAGTTAAATATTTCATGTGTACAACATGTTCCATAAAATTATTTGctgcttttaattttaagtctgtATGTATGGATACGGAGGATTTAATTTTTCCTCATATTAACGCTAATGAAATGTCAGTGATTGATTTAAAGGAAGTTTATCTAAAAGAGAAGGGAAATATTCAGTTAAACGATATATCCGAAGATTGGAGAATCTGTCGACTATGTTTTCAGCCGGTAACTTACGAATTTGTGGCACTAAATGAAGTGGACCTTGACATAATCAATACATATATACCACAGGttaacatCAGTGCTACCAGGGATCCTGTTATATGCACAACATGCTGTGAGTCGCTTCGTACCCATGGCAGTTTTTTAAAGAACTGCCTTGATGCGCAggaaaaatgtacaaatgtcGATAAACAGTCTTACGTTAAAACTGAGGAAATAGAAATAAAACTGGAAGGTTATCAGGACAGtGACACGCAACTGCAGAGCTCCGATAATGAACCATCCGCGAAGAGTGACTGTAAAGATACTGAAGAGGATGGATGTAAAGCTGAGAATAGGGCAGcgaataaatttaacataaaaatcaACCAAGAACGCAAACTATCATACAAGTATGACAAATGTGATGACAAAACTGAAAGCGAGAGGTGTTTAACAACAAACTgtgcaaaacaaaaaaatgattcgGTAGTATATGAATGTGAATCGTCAAAATAtgaaaccaaaaataaaaaattacttcagaGACatgaaaacatttcaaaaatacatatgCACCAGTACAAATCATGTAATTACAAGACAAAGTGCAGGTCTAATCTTGCTAAGCATCAGGTGAAGCCCAAAGCAAAATTGTACAAGTGCAACTTCTgtgatttcaaaacaaaatgGAGGGCCAATTTTAATAGACATTATATGAAACACAAAGACTCAAACAAATGGGATGAGTATAATTATAAAACCAAATACAAGGCATTGCCAGATAAAGACACTTCACAGCTGCCGATTTATAAATGTCATGGTTGCAACTACGAATCAATGGATAAGAATAGTCTCATCAAACATCAGTTGGTACATAAAGATCATTCTCAGGTCCAAATGTACACATGTAATGACTGCGAGTTCAGTACTAAGTACAAGAATGGTATCAAAGTGCACCGACTGAAACATAAAGAACCTTCGCAGAttaaaatgtacaggtgtaatgactgcgattatAAAACTAGATACAATggtaatttaaaacaacatcaactgaaacataaagacccTTTGCTAGTTCAAACGTATACGTGTAACGAttgcgattacaaaactaaatacaagagtaatatcaaaatacatcaactgaaacataaaaatcCTTCACAGATTCAAATGcacaggtgtaatgactgcaattacaaaacaaaatacaaaaatgataTCAAACGACATAAACTGAAACATACAGATCCTTCGcaaattcaaatgtacaagtgtgaagactgcgattttgaaacaaaatacagGAAAGTTATCAATCGGCACAAACTTAATCATAAAAATCCTTCGCAGATTTAA
- Protein Sequence
- MQATIVEETFCRLCLNTIRDSNCRVIEEVIRDILKIVLPDVNLEEKVTHVMCATCSVKLFAAFNFKSVCMDTEDLIFPHITASKISVIDLKEVYLKEKGNIQLIDASEDWRICRLCFQSVTYGFVALNEVDVDVIDTYIPQVNIGATRDPVICTTCFDSLCTHGNFLQNCIDAHEKYTNVDKQSYIKTEEIEIKPEDHQDCDTLQLTSDDESLEKSDSKCTEEDGCRAVNKYNTKSKKERKVSYKCDKCIYETESERCFTAHCERHKNDYVVYKCESCKYKTKNKKLLQRHLLRHKSISKIRMHQYESCNYETKCRSNLAEHQVKHKTQLYKCNFCDFKTKRRTNFNSHYIKHKDSNKCDEYDYKTECKSLPLNDTPQLRIYKCNGCNYESKDKSNFNKHQLVHKDPSQVQMYRCNDCHHESKYKNAIKRHQLKHEDPSQVQIYSCNDCNYTAKYKNNIKQHRLKHKDPSQIQMYRCNDCDYETRYRRYLKQHQLKHKDPLLVQTYRLEMVKGLIINLVLPGILLYAQHANINTTRDPVICTTCCDSLRTHGSFLKNCLDAQEKYTNVDKQSYVKTEEIEIKLEDDQVAREKYKNVDKQSYVKTEEIEIKLEDEGRLCLNTISDSNCQVIEKDISDILKIVLPHLNLDEEVKYFMCTTCSIKLFAAFNFKSVCMDTEDLIFPHINANEMSVIDLKEVYLKEKGNIQLNDISEDWRICRLCFQPVTYEFVALNEVDLDIINTYIPQVNISATRDPVICTTCCESLRTHGSFLKNCLDAQEKCTNVDKQSYVKTEEIEIKLEGYQDSDTQLQSSDNEPSAKSDCKDTEEDGCKAENRAANKFNIKINQERKLSYKYDKCDDKTESERCLTTNCAKQKNDSVVYECESSKYETKNKKLLQRHENISKIHMHQYKSCNYKTKCRSNLAKHQVKPKAKLYKCNFCDFKTKWRANFNRHYMKHKDSNKWDEYNYKTKYKALPDKDTSQLPIYKCHGCNYESMDKNSLIKHQLVHKDHSQVQMYTCNDCEFSTKYKNGIKVHRLKHKEPSQIKMYRCNDCDYKTRYNGNLKQHQLKHKDPLLVQTYTCNDCDYKTKYKSNIKIHQLKHKNPSQIQMHRCNDCNYKTKYKNDIKRHKLKHTDPSQIQMYKCEDCDFETKYRKVINRHKLNHKNPSQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -