Agla002930.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:335604-344957[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 6 1.8e+02 2.6 2.0 11 23 236 248 232 248 0.86
2 18 0.21 6.4 7.2 4.5 2 23 258 279 257 279 0.97
3 18 0.0044 0.14 12.4 1.6 1 23 288 310 288 310 0.99
4 18 0.02 0.62 10.4 3.0 1 23 319 341 319 341 0.98
5 18 0.14 4.3 7.7 1.3 2 23 351 372 350 372 0.97
6 18 0.5 15 6.0 6.3 1 23 381 403 381 403 0.98
7 18 0.0045 0.14 12.4 1.1 1 23 412 434 412 434 0.99
8 18 0.16 5 7.5 2.6 2 23 442 463 441 463 0.97
9 18 0.0057 0.18 12.1 2.3 1 23 472 494 472 494 0.99
10 18 0.14 4.3 7.7 1.3 2 23 504 525 503 525 0.97
11 18 0.44 14 6.1 7.8 1 23 534 556 534 556 0.98
12 18 0.031 0.95 9.8 2.2 1 23 565 587 565 587 0.99
13 18 0.15 4.6 7.6 2.9 2 23 595 616 594 616 0.97
14 18 0.0063 0.19 11.9 2.5 1 23 625 647 625 647 0.99
15 18 1.8 56 4.2 5.2 1 23 656 678 656 678 0.97
16 18 0.0015 0.046 13.9 1.6 1 23 687 709 687 709 0.99
17 18 0.045 1.4 9.2 3.9 2 23 717 738 716 738 0.97
18 18 0.0057 0.18 12.1 2.3 1 23 747 769 747 769 0.99

Sequence Information

Coding Sequence
ATGTTCAAAGAGGAATCGTCCTGTAGGCTTTGCCTTAGTGTCGTAAATGATGAAAATCTCGTAGTAATAGAAGAAACTATTAAAGCAgttctagatgttcttttacTAAAACTAaaCGGGAAAGAAAAGAAAGAATCTATAATGTGCAATGCCTGTTCCATTAAACTGTTTGCGGCATTCAACTTCAAGGCGACCTGTACGGATACCGAGGACCGTATCTTTCCATACATCGATTCTGAAATGGAGACGCCGGTCGACCTAAGAGAAATTTATCTAAAGGAAAGAGGTAAAGAGCATTTAAAAGATATGTTGGAAGACGAGAGGATTTGTCGTTTGTGTATGCAAGTGATAACCTGTGGATTTACACCAGCAAAAGAACTGGATGTCGATACACTCTGTCAATATATTCCCGAAGtgAACTTGACTTCCACCACAGATACCGTTATTTGCAATGTCTGCATCAATTCTTTGGTCACCCACACGAGTTTCTTAAAGGGCTGTTTTAACGTGGAAgagaaaattacaaatatttcagaCAACAGAAGAACCATAGAGAGTCCATTTCATATTATCACAGAAGAAATTGAACTAAAATCCGAAGATTACAAaGCATCTCCCTCGGAAGATGAAGACTCTGACAGCGCAAGTGGCTGTCGATCTGAATTTGAGGAAACCGCAAATATTTCTACGGGCAACCGTAAAAGGAAACAAAGGAAATACCTTACACGACACCAGTTGAAACACAAAAACATCCTCGAAGAGCATGTGTTAAAATGTCACTTATGCAGTTATACAACTATTTATAAGAAGCGTTTTGCACGCCATCAGCTCAGACACAAAAACATCCCAGAAGAGCAGATGTACAAATGTGACTCCTGTGAATATAAGACCATTTTAAAACGCTATCTTATACGACACCAGCGAATACACAATAGCGTTCCTCGAAAGCGGGAATTTAAATGTGATTCGTGTGACTATAAAGCTGCTCATAAGAGCCGTCTTATGCAACATCAACTGAAACACAAATACATCCCCGAAGAACAGATGTTGAAATGTGACTCGTGCGATTACAAAACCGGTCAAGAGAGATACTTTACACAACACCTGTTGAGACACAAAGACATCTCCGAGGAGCAGATGTTTAAATGCTGTTCGTGCAGCTATAAAACTGTTTACAAGCAACACCTTGCAGATCATCAACTTACACACAAAGACATCTACGAGGAGAAGAGGTATAAATGTGATTTGTGCGATTTTAAAACTGATTATAAGGGCAATATGGCACAACATCAACTTAGACACAAAGGAATCCTCGAGATGTTGAAGTGCGATTCCTGCGATTTTGAAACACATGCAAGGAGCAGTCTTGCACGACATCGACGAAAACACAGAGCCTTCCGGGAAGGTCAAATGTATAAATGTAATTCCTGTGATTACAAAACCGTTTTTAAGCCCTATCTTACACAACATCAACTGAGACACAAAGACATCCCCGAAGAACAGATGTTGAAATGTGATTCGTGCGATTACAAAACCGGTCAAGAGAGATACTTTACACAACACCTGTTGAGACACAAAGGCATCTCCGAGGAGCACATGTTTAAATGCTGTTCGTGCAGTTATAAAACTGTTTATAAGCGACACCTTACAGATCATCAACTTACACACAAAGACGTCTCCGAGGAGAAGAGATATAAATGTGATTCGTGCGATTTTAAAACGGATTATAAGCGCAATATGGCACAACATCAACTTAGACACAAAGGAATTCTCGAGATGTTGAAATGCGATTCCTGCGATTTTGAAACACATATAAAGAGCAGTCTTGCACGACATCGACGAAAACACAGAGCCTTCCGGGAAGGTCAGATGTATAAATGTAATTCCTGTGATTATAAAACCGTTTTTAAGCCCTATCTTACACAACATCAACTGAAACACAAAGACGTCTACGACCAACAGTGGTTTGCATGCTGTTCATGCAGTTATAAAACTGTTAATAAGCACCGCCTTGCACAGCATCAACTTACACACAAAGACATCTTCGAAGAGAAGAGGTATAAATGTGATTCATGCGATTTTAAAACTGATTATAAGGGCTCTTTGGAACGACATCAACTTAGACACAAAGAAATCCTCGAGATGTTGAAATGTGATTCCTGCGAttttaaaacacATGTAAAGAGCAGTCTTGCACGACATCGACGAAAACACAAAGCCTTCCGGGAAGGTCAGATGTATAAATGTAATTCGTGTGATTATAAAACCGTTTTTAAGCCCTATCTTACACAACATCAACTGAGACACAAAGACATCTCCGTGGGGTAG
Protein Sequence
MFKEESSCRLCLSVVNDENLVVIEETIKAVLDVLLLKLNGKEKKESIMCNACSIKLFAAFNFKATCTDTEDRIFPYIDSEMETPVDLREIYLKERGKEHLKDMLEDERICRLCMQVITCGFTPAKELDVDTLCQYIPEVNLTSTTDTVICNVCINSLVTHTSFLKGCFNVEEKITNISDNRRTIESPFHIITEEIELKSEDYKASPSEDEDSDSASGCRSEFEETANISTGNRKRKQRKYLTRHQLKHKNILEEHVLKCHLCSYTTIYKKRFARHQLRHKNIPEEQMYKCDSCEYKTILKRYLIRHQRIHNSVPRKREFKCDSCDYKAAHKSRLMQHQLKHKYIPEEQMLKCDSCDYKTGQERYFTQHLLRHKDISEEQMFKCCSCSYKTVYKQHLADHQLTHKDIYEEKRYKCDLCDFKTDYKGNMAQHQLRHKGILEMLKCDSCDFETHARSSLARHRRKHRAFREGQMYKCNSCDYKTVFKPYLTQHQLRHKDIPEEQMLKCDSCDYKTGQERYFTQHLLRHKGISEEHMFKCCSCSYKTVYKRHLTDHQLTHKDVSEEKRYKCDSCDFKTDYKRNMAQHQLRHKGILEMLKCDSCDFETHIKSSLARHRRKHRAFREGQMYKCNSCDYKTVFKPYLTQHQLKHKDVYDQQWFACCSCSYKTVNKHRLAQHQLTHKDIFEEKRYKCDSCDFKTDYKGSLERHQLRHKEILEMLKCDSCDFKTHVKSSLARHRRKHKAFREGQMYKCNSCDYKTVFKPYLTQHQLRHKDISVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-