Agla003845.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:140080-154763[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.051 1.6 9.1 6.2 1 23 274 296 274 296 0.97
2 15 0.21 6.5 7.1 0.9 1 23 334 357 334 357 0.96
3 15 0.1 3.2 8.1 2.6 1 21 385 405 385 406 0.94
4 15 0.26 7.9 6.9 2.7 2 23 410 431 409 431 0.97
5 15 0.017 0.51 10.6 6.8 1 23 440 462 440 462 0.99
6 15 4.6 1.4e+02 2.9 0.6 1 23 522 544 522 544 0.91
7 15 0.025 0.78 10.0 1.2 1 23 553 575 553 575 0.98
8 15 0.0024 0.075 13.2 5.6 1 23 581 603 581 603 0.98
9 15 0.00079 0.024 14.8 5.6 1 23 612 634 612 634 0.99
10 15 5.7 1.8e+02 2.6 4.2 1 23 643 666 643 666 0.91
11 15 0.36 11 6.4 1.5 1 23 694 716 694 716 0.98
12 15 6.5e-05 0.002 18.2 1.5 1 23 725 747 725 747 0.97
13 15 1.3e-05 0.00039 20.4 1.4 1 23 756 778 756 778 0.99
14 15 0.0056 0.17 12.1 3.2 1 23 787 809 787 809 0.98
15 15 0.04 1.2 9.4 2.5 1 23 818 840 818 840 0.98

Sequence Information

Coding Sequence
atggAGGATTTTGGGGAACAGTATTGTGCGCTGTGCGTCAATACCATAAGCGATgggaattttaaagaaatacaaGTCGTTACCAGggatatttttgaggttattttGCTGAAAGTGGATTTTGACGGCAGAAGTAAACAAGTAATATGTAACATTTGTTCATTAGCCGTCATGGAAGCATTCAAATTCAAATCAATGTGTCTCTATACTGATTACACCATAATTCCTTATGTCGATGACGAAACAGGATGTTCTGTTAGCTTAATGGAGATTTACACAAAGGAAAATGGAATCGAACAATCAATCGAAACAATGAGGGAGCAGAAAGTATGCCGATTATGTTTTCAACTAATAAGGGCCGAATTTATCTCGGTACATGATGTAAATATTGATATGATCGAGTGTTATATTCCAGAAATAAATTTCAGTGTCACCGAAGATCCTGTTCTTTGTAGACACTGTTTCGATTCCTTCGACATCCACAGTTCTTTTGTAAAGAGATGTTCGGAGgtagagaaaaaagttaaaagtattCAGCCATCATTAATTTCGAGCATTAAAAcggatatcaaaataaaatctgAAGCAAGTGATCAGGAAGAGGAGTTGAGCAAAATTGAGTCTACTATaatgaaaactgaaaaaaaagaaatgtctATTAAAGCCGAGTCTATCGAAATAAAAACGGAAGAAAATAACGAAGAGAGtgaCGCACCTGATTATGAATCAGAACTCGAAGGTGTTTCCGAAGTAGACAAAATCAAATGTAAACCTAAAAGGCATATGTTGAAAAGGAAAAAGGGAGcagtgaaaaaaattcatacatgCGAAAAGTGTGACTATAAGACTGTATTTAAGAACCACTTTACAAATCATCAGCTGATACACGAAAATGTTCCTAAAACAAAAAAGGAAGGATGTCCCAGTTATGAAGCGAAGAAGAAGAGCCCTCTTTTAAGCCATCGCTTACATGACAAAAATTCTTCTGAAGTGAACagatttaaatgtatttattgcGATTATAAAGCAAAACGGAAGGGTGTCCTGCGGGAACATTACATAACCAATCATGAAGAGAATTTGCTGGACCCcaaggaaaattcaaaaataaaacaaatgcttAATCTCAGATATCCGTTACCTGTGAAAATACATAAATGTGATATATGTCCCTATACAGCTATAAACAAGAAGAAACTTCTAAACCACCGGTGCAAGTTGCCCCTAAAGTGCTACCAATGCAGTTACACGACCCAGTTTAAGTTCCAGTATACAGCCCACCAAATGATGCACGAGAACCCCTCAAATATGGAAATGTACAAGTGTCACAACTGCAATTATGAAACCAAATATAAGAACCGCCTTACAAAGCACCAGTTAAAACACAAAAATCCAGAGCAAGTGCAGATGCACAAATGTATTTACTGTAATTATGAAGCAAAATGTAAGGGAAGTTTGAGGTCGCATCTGTTACTTATTCATGCAGACTTCCTATATGACCCCAAGGAGAATTTGAGGGTTCAGGGTATGCTGAATTTCAGGAAGCCAATTTCACTAAagatgtacaagtgtgataaATGCATCTATGAAACACTAAACAAGACTGCCTTCAACGCACACCAATTGATACACAGGGACCGATCACACGTCCGAATGTACACATGTGAAGTGtgtgattttgaaaccaaataTAAGAAAAGTCTTGACGGCCACAAAATGACACATGCCGAGGAGCTAAATTTCAAGTGCCACACCTGCAGATACGCGACCAAGCAAAAAAAACAACTTGCCCGCCACAAGTTAACACACTTAAACATTGCCGAAGTGCGAATGTACAAGTGTCACAACTGCGATTATGAAAGCAAGTATAAGGGCCACCTTGCAAGGCATCAATTAAAACACCAAAATCCAGAGCAAGTACAGATGCACAAATGCATTTACTGCAGTTATGAATCAAAACATAAGGAAAGTTTGAGTTCACACATAGAATTTAATCACAGAGACAAGTTGCTCGACCCCGAAGAGAATTCAAAGGTAACACGTATGCtgaatcgtaaaaaaatattttcgttggAATCGTACAAATGTGACAAATGCTCCTTTGAAACCCCACACAGAAGCATCCTCAATGGCCATCTCTTGACTCACAAGGATCGATCGCAGGTGCGAATGTACATGTGCAATGAATGCGGTTATGAAAGCAAGCGTAAGTATAGTCTCACTAAACACAAATTGATACACAAAAGTCCAGCCGAGGTGCAATTATACAAATGTGACACTTGCAACTATGCAGCCAAGAGGAAAAGTGCCCTTAAACGGCACCAGTTAACCCACAATAATAACGTTGAAGTGCAAATGTACAAATGTCGGACATGTAACTACAAATCCAAATTTAAGAGTAGCCTTGAAATTCACCAATTACAGCATAAAAGCCATTCCAAAGAGAAAATGTACACATGTGATATGTGTGATTATGAAACCAAATACAGGATTTGTCTTATTAACCACAAACTGATGCACAAAAATCAATCTGAGGTGCAAATGTACAAGTGA
Protein Sequence
MEDFGEQYCALCVNTISDGNFKEIQVVTRDIFEVILLKVDFDGRSKQVICNICSLAVMEAFKFKSMCLYTDYTIIPYVDDETGCSVSLMEIYTKENGIEQSIETMREQKVCRLCFQLIRAEFISVHDVNIDMIECYIPEINFSVTEDPVLCRHCFDSFDIHSSFVKRCSEVEKKVKSIQPSLISSIKTDIKIKSEASDQEEELSKIESTIMKTEKKEMSIKAESIEIKTEENNEESDAPDYESELEGVSEVDKIKCKPKRHMLKRKKGAVKKIHTCEKCDYKTVFKNHFTNHQLIHENVPKTKKEGCPSYEAKKKSPLLSHRLHDKNSSEVNRFKCIYCDYKAKRKGVLREHYITNHEENLLDPKENSKIKQMLNLRYPLPVKIHKCDICPYTAINKKKLLNHRCKLPLKCYQCSYTTQFKFQYTAHQMMHENPSNMEMYKCHNCNYETKYKNRLTKHQLKHKNPEQVQMHKCIYCNYEAKCKGSLRSHLLLIHADFLYDPKENLRVQGMLNFRKPISLKMYKCDKCIYETLNKTAFNAHQLIHRDRSHVRMYTCEVCDFETKYKKSLDGHKMTHAEELNFKCHTCRYATKQKKQLARHKLTHLNIAEVRMYKCHNCDYESKYKGHLARHQLKHQNPEQVQMHKCIYCSYESKHKESLSSHIEFNHRDKLLDPEENSKVTRMLNRKKIFSLESYKCDKCSFETPHRSILNGHLLTHKDRSQVRMYMCNECGYESKRKYSLTKHKLIHKSPAEVQLYKCDTCNYAAKRKSALKRHQLTHNNNVEVQMYKCRTCNYKSKFKSSLEIHQLQHKSHSKEKMYTCDMCDYETKYRICLINHKLMHKNQSEVQMYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-