Agla009272.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:15434-30485[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00094 0.029 14.5 6.0 1 23 266 288 266 288 0.99
2 10 0.0021 0.064 13.5 4.1 1 23 297 319 297 319 0.99
3 10 0.0041 0.12 12.5 3.8 1 23 328 350 328 350 0.98
4 10 0.0031 0.096 12.9 4.1 1 23 359 381 359 381 0.99
5 10 0.0027 0.083 13.1 3.2 1 23 390 412 390 412 0.98
6 10 0.0026 0.079 13.2 7.2 1 23 421 443 421 443 0.98
7 10 0.00091 0.028 14.6 4.1 1 23 452 474 452 474 0.99
8 10 0.0008 0.025 14.8 1.6 1 23 483 505 483 505 0.98
9 10 0.034 1.1 9.6 4.4 1 23 514 536 514 536 0.98
10 10 0.023 0.7 10.2 5.8 1 23 545 568 545 568 0.98

Sequence Information

Coding Sequence
aTGACTGGTGTGCAAGAAACTTCGTGTAGGCTTTGCCATACAACTGTAACCATAacaaatttttcagtaatagACAACGTTATTAGAAATGTTCTTGATgctcttttgctgaaattgaaattcgATAGTGAGAGCAAGGAAGTTATATGCAATActtgcagaaaaaaattatatgcagCATTCGAATTCAAGTCAACATGTCTGAATACCAATAATACAATTGTTCCACAAGTTGATTTAAAACAAGTTTACATGAAGGAAGAGAGCAGTAAGTCAATGGATATTTCAGAcagtcagaaaatatgtcggTTGTGTATGCAGCCAGTAAGAAGTGAGTTTACGTTCATACATGAAGAGGAACTCGAAACTATTCAGAAATTTGCCCCTGAAATGAATATAGATATTAAAGATCATCCCATTGTATGTAAGGAATGTTTTGATTCCCTGTGCATCCACAACAGTTTCCTAAGAGAATGCTTAGAAGTAGAGGAGAAAATTAAAGGTAGTTTTGATAGTCAAGCCACAGAAAGACAAATAGATACATTACCATGTGATTTATTCGTTAAGACTGAAAATCTGTACAAAGAATTTGATATTAACAGGACGGATTTGTCAATCAAAACTGAATGTGTCGACATAAAATCTGAAGATGAGGAAAGAAGtGACATGCCACTGCAGAGGTCCGATAATGAACCGTTTCAGGAGAGTGACTGTAAAGATACAGAAGAGGAAGGATGTCAACATGGGACTGGATCGGAAAACAAAAGTAATACAACAACCaagcaggttcaaatgtacaaatgtaatgactgtgattacgaaactaaacaCAGCGGTTGTCTCAAAacgcatcaactgaaacataaagatccttcacaggttcaaatgtacaggtgtaaccagtgcgattacgaaactaaatatagGGAGAATATCAAACATCACCAACTgacacataaagatccttcagaggttcaaatgtacagttgtaatgactgcgattacaaaactaaatacgGAAGTCACATCACAcgacaccaactgaagcataaagatccttcgcagactgaaatgtacaggtgtaaccaCTGCGagtacgaaactaaatacagagAGAATATCAAGCAGCACCAACTGACGCACAAAGATCCTTcagaggttcaaatgtacaggtgtaacgactgcgattacgaaactaaatacggGAGCCATATCACAagacaccaactgaaacataaagatccttcacagattCCAATGTATAGGTGTAACcactgcgattatgaaactaaatacaggagTCATATCACacgacaccaactgaaacacGAAGATCCTTCGCAGATCCCAATGTATCGGTGTAAccactgcgattacgaaactaaatacagggagaatatcaaacagcaccaactgacACATCAAGATCCTTCagagattcaaatgtacagatgtaacgaatgcgattatgaaactaaattaaagggtaatatcaaaaagcaccaactgaaacataaaaatacttcccaggttcaaatgtacaggtgtaacgactgcgattacgaaaataaatacaaacatgCCATGAAacggcaccaactgaagcataaagatccttcgcaggttcaaatgtacaaatgcAACGAttgcgattacaaaactaagTACAAGCATGTTATCAAAAAGCACCAAAGCACCAAACATAAAGATCCATCTCagatgtaa
Protein Sequence
MTGVQETSCRLCHTTVTITNFSVIDNVIRNVLDALLLKLKFDSESKEVICNTCRKKLYAAFEFKSTCLNTNNTIVPQVDLKQVYMKEESSKSMDISDSQKICRLCMQPVRSEFTFIHEEELETIQKFAPEMNIDIKDHPIVCKECFDSLCIHNSFLRECLEVEEKIKGSFDSQATERQIDTLPCDLFVKTENLYKEFDINRTDLSIKTECVDIKSEDEERSDMPLQRSDNEPFQESDCKDTEEEGCQHGTGSENKSNTTTKQVQMYKCNDCDYETKHSGCLKTHQLKHKDPSQVQMYRCNQCDYETKYRENIKHHQLTHKDPSEVQMYSCNDCDYKTKYGSHITRHQLKHKDPSQTEMYRCNHCEYETKYRENIKQHQLTHKDPSEVQMYRCNDCDYETKYGSHITRHQLKHKDPSQIPMYRCNHCDYETKYRSHITRHQLKHEDPSQIPMYRCNHCDYETKYRENIKQHQLTHQDPSEIQMYRCNECDYETKLKGNIKKHQLKHKNTSQVQMYRCNDCDYENKYKHAMKRHQLKHKDPSQVQMYKCNDCDYKTKYKHVIKKHQSTKHKDPSQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-