Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:59235-64233[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00046 0.014 15.5 1.9 1 23 298 320 298 320 0.99

2 9 0.16 4.9 7.5 2.6 3 23 331 351 329 351 0.95

3 9 0.00054 0.017 15.3 3.7 1 23 360 382 360 382 0.98

4 9 0.043 1.3 9.3 0.9 1 23 412 434 412 434 0.97

5 9 1.6 48 4.4 0.4 1 14 443 456 443 458 0.87

6 9 0.055 1.7 9.0 3.8 1 21 488 508 488 509 0.95

7 9 0.00018 0.0056 16.8 3.0 1 23 519 541 519 541 0.99

8 9 0.0015 0.046 13.9 2.2 1 23 550 572 550 572 0.98

9 9 0.00013 0.0039 17.3 2.2 1 23 581 603 581 603 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00046	0.014	15.5	1.9	1	23	298	320	298	320	0.99
2	9	0.16	4.9	7.5	2.6	3	23	331	351	329	351	0.95
3	9	0.00054	0.017	15.3	3.7	1	23	360	382	360	382	0.98
4	9	0.043	1.3	9.3	0.9	1	23	412	434	412	434	0.97
5	9	1.6	48	4.4	0.4	1	14	443	456	443	458	0.87
6	9	0.055	1.7	9.0	3.8	1	21	488	508	488	509	0.95
7	9	0.00018	0.0056	16.8	3.0	1	23	519	541	519	541	0.99
8	9	0.0015	0.046	13.9	2.2	1	23	550	572	550	572	0.98
9	9	0.00013	0.0039	17.3	2.2	1	23	581	603	581	603	0.98

Sequence Information

Coding Sequence: ATGACTGGTGTTCATGAAACTTGGTGTAGGTTTTGCCTTAAAACTGTAATCGTTAAGAGTTTTGCTTTAACAGACAACGTTATCAATGATATTTTAGATGTTCTGCTGAAATCGaaattcgATTGTGAGAGCAACGATGTTATATGTAATGCTTGCAGAAGAAAATTATATGCAGCATTTGAATTCAAGTCAACGTGTTTGAATACTGATAGCACAATTGTTCCATACGTGGATtgcgaaaaaatgttacagctcgacataagagaaatttatttgaaggaAAGAAGTGAAGATATTTCAGACAGTCAAATAATATGTCGGTTGTGTATGCACCCAGTAAAAGGTGAGTTTAGTTGCATACGTGAAGAGGAACTTGAAGCTATTGAGAAATTGGCCCCTGAAATGaaTATAAATGTCATCAAAGATCCAGTTGTATGTAAGCCATGCTACGATTCTCTGTGTACTCACaacagtttcctaaaaaattgctTAGAAGTAGAGAACAAAATTAGAGGTATATATGACGGTTCGGTTACAGAAAGTCAGACAGATACTTCACCATCTGATTTATTTGTTAAGACTGAGAACACGGACAAAGAATTCGATATTAACAACGTGGAAATGTCGATCAAAACTGAAAGTATTGACATAAAATCGGAAGATGAGGAATCCAGtGACACGCTACTGCAGGATTCCGATAGTGGATTATTCAAGAAGAAGGACTGTAAAGATGTAGAACATGATGGATGTAAGCCTGAAAATAAATCAGAGAACAAATGTAATACGAATTCCAAGCAGGAGCACAAAGTTTCGTACAAATGTATTAACGAAACTGGAAGCAAGAGTTGTTTTACAGCACACCGTGCGAGACACAAAAATGATTCGGAAGTGTATAAATGTGAATCGTGTAAGTATGGAACTAAAAATAAGGAATTACTTCAGAAGCACCTGTTGAGGCATAAAAACCCTTCGGAAATACTTACGCATCTGTGTGAATCATGTAATTACAAGACAAAGTATAGAAGTGTCCTTGCTAAGCATCAGGCTAAACACAAAAGTGCATCTGGGGCACGATGGTACCAGTGCAACCTTTGTGATTTCAAAACAAAGCAGAGGTCCAACTTCAATAGTCAttatataaaacacaaaaactcAAACAAACGTGACGAGTTTGATCATAAAACTAAATGCGACACATTGCCACATAAGGAAGCTTCTTTACAACTACCAGTTTATAAATGTGCTAGTTGCAACTACGAATCGAAGAATAGGAAACTTTTCATTAGACATGGTTTGGTACATAAGGATCCCTCACAGGTCAAAATGTACAGGTGTGACGactgcaattacgaaactaaatacagcaGTGTTATTACACAGTACCAGTTGACACATAAAGATCCCTCGCAGGTCAAAATAAAGCACCAACTTatacataaagatccttcgcatgTTCAAATGTACACGTGTAGcaactgcgattatgaaactaaatacaagagttgtATCAAACGGCATCAACTGAAGCAGGAAAATCCTTCACAAGTTCAGATGTACAgatgtaatgactgcgattacaaAGCTAAATACAGGAGTAATATCAAACGGCATCAACAGAAGCATGAGAATCCTTCgcaagttcaaatgtacaggtgtaatgactgcggTTACGAAGATAAATACAGGAGTAATATGAAACGGCATCAACTGAAGCATGAAAATCCTTCGCATGtacaaatgtacaggtgtagcgactgcgattatgaaactaaatacaggagTAATATCAACCGGCATCAACTGAAGCATGAAAAGCCTTCGCAAGTTCACAGatga
Protein Sequence: MTGVHETWCRFCLKTVIVKSFALTDNVINDILDVLLKSKFDCESNDVICNACRRKLYAAFEFKSTCLNTDSTIVPYVDCEKMLQLDIREIYLKERSEDISDSQIICRLCMHPVKGEFSCIREEELEAIEKLAPEMNINVIKDPVVCKPCYDSLCTHNSFLKNCLEVENKIRGIYDGSVTESQTDTSPSDLFVKTENTDKEFDINNVEMSIKTESIDIKSEDEESSDTLLQDSDSGLFKKKDCKDVEHDGCKPENKSENKCNTNSKQEHKVSYKCINETGSKSCFTAHRARHKNDSEVYKCESCKYGTKNKELLQKHLLRHKNPSEILTHLCESCNYKTKYRSVLAKHQAKHKSASGARWYQCNLCDFKTKQRSNFNSHYIKHKNSNKRDEFDHKTKCDTLPHKEASLQLPVYKCASCNYESKNRKLFIRHGLVHKDPSQVKMYRCDDCNYETKYSSVITQYQLTHKDPSQVKIKHQLIHKDPSHVQMYTCSNCDYETKYKSCIKRHQLKQENPSQVQMYRCNDCDYKAKYRSNIKRHQQKHENPSQVQMYRCNDCGYEDKYRSNMKRHQLKHENPSHVQMYRCSDCDYETKYRSNINRHQLKHEKPSQVHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -