Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:1851-5349[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.085 2.6 8.4 1.2 1 23 270 292 270 292 0.98

2 12 0.022 0.69 10.2 3.8 1 23 321 344 321 344 0.97

3 12 1.3e-05 0.0004 20.4 2.6 1 23 353 375 353 375 0.99

4 12 0.01 0.31 11.3 6.6 1 23 386 408 386 408 0.99

5 12 0.0065 0.2 11.9 8.0 1 23 437 459 437 459 0.98

6 12 0.001 0.031 14.4 6.6 1 23 468 490 468 490 0.96

7 12 0.00091 0.028 14.6 3.0 1 23 499 521 499 521 0.99

8 12 0.015 0.45 10.8 2.0 1 23 530 552 530 552 0.97

9 12 0.079 2.4 8.5 3.7 1 23 561 583 561 583 0.99

10 12 0.085 2.6 8.4 1.2 1 23 592 614 592 614 0.97

11 12 0.028 0.85 9.9 2.4 1 23 623 645 623 645 0.98

12 12 0.1 3.2 8.1 4.2 1 23 652 674 652 674 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.085	2.6	8.4	1.2	1	23	270	292	270	292	0.98
2	12	0.022	0.69	10.2	3.8	1	23	321	344	321	344	0.97
3	12	1.3e-05	0.0004	20.4	2.6	1	23	353	375	353	375	0.99
4	12	0.01	0.31	11.3	6.6	1	23	386	408	386	408	0.99
5	12	0.0065	0.2	11.9	8.0	1	23	437	459	437	459	0.98
6	12	0.001	0.031	14.4	6.6	1	23	468	490	468	490	0.96
7	12	0.00091	0.028	14.6	3.0	1	23	499	521	499	521	0.99
8	12	0.015	0.45	10.8	2.0	1	23	530	552	530	552	0.97
9	12	0.079	2.4	8.5	3.7	1	23	561	583	561	583	0.99
10	12	0.085	2.6	8.4	1.2	1	23	592	614	592	614	0.97
11	12	0.028	0.85	9.9	2.4	1	23	623	645	623	645	0.98
12	12	0.1	3.2	8.1	4.2	1	23	652	674	652	674	0.98

Sequence Information

Coding Sequence: atGACCGACTTTAAGAACTTTGCATGTAGGCTTTGCCTCAAAACTATTACAAATACAAACTTTGAAATAATAGACGACGATATTAGAAACATTCTAAGTGCCCTTCTACTAGAGTTGAAACGTTTTGAGAACAAGGAGTTAATATGTAACGCTTGcaataagaaattaaatgcagCCTTCGACTTTAAATCAATGTGTAGGAATACCAATAAAACAGTTATTTCAAATAAGGATTGCGAGAATATGTTACAGCTCGACTTAGGAGCAGTTTATATGAAAGAAAAGGCAAGCGATCAGTTAATGGATATTTCATGCGATCAAAAGGTATGTGGACTGTGTATGCAGTTAGTAAAAAGTGAATTTAGATGCATACGCGAAGAGGAACTCGAAGCTATTCAGAAATTCGTCCCAGAAATGgtTATAAAGGTTATTAAAGGTCCTGTTGTATGTAAACCGTGCTTTGATTCTCTGTGCACACACAACAGCTTTCTAAAGGATTGTTTAGAAGTAGAAGAAAAAATTAGAAGCACTTGTGACAGTTCAGCCCTGGAGAGTCAATCGCCATCTGACTTATTCGTTAAGATTGAACAGTTGGGTGAACTGTGTGAAACAGACGAGACGGAAATGTCCATCAAAACTGAATGCATCGAGATAAAACCGGAACTAGATGAAGAAGACGGGCACGCAACGCCTGAGAACAGTGCGTCTAGAGACTTGCGAGAGGTCGCAGATAAATCGAAACACGACAGCGGATTagtgaaaaaaactaaaagatcCAGAAGCAAGAGCACACCGAACCAGGTACCGTACAAATGCGGCAAATGCGTTTACGAAACCAAAAGTGAGAGCCGTTTCACGGCACATTACGCGAGACATATAAAAGCTTCAGCCGAATATAAGAAGTCGCTTCATATGCAGCTGCTGCAGCGCGTAGAACCTCCCGCCCCCCCACCACAAAGCTACAAATGCGACTATTGCAATTTCGAAACAAAATACAAGTGCAGCGTCAACAGGCACCAATTAATAGTGCACGAAAAATCCCTGGAGGTACGCTCGTACAAGTGCAGTGAGTGCGATTTCGAAACGAGGAATAAATACAATCTCACTAAGCACCTGTCGACGCACGACAGTATCTCGCGAGCGCAAAAGAGCGAGTACAAGTGCGAATCGTGCGATTACAAAACAAACCATAAGTTTGCCTTCAAGAGGCATCAACAGAAACACGTAAGTTCTGCCGAAGCGCAAAACACCGATTCTAGCCCTCAGAATCACCAGCTAGAACACGAAGAGACTTCGATAGTCACGGTGTATTCGTGCAACGACTGCCATTATAAAACGAAACATAGGGAGTGCCTCGTACGTCACATGGTGACACATCGCGACTCGTCAGTTGTGCGAATGTTCTCGTGCAACGACTGTGATTATAAAACCAAACACAAGGACTGTCTCAAACGTCACATGGTGCAACACAAGGACCTGACGCGGGTGCAAATGTACAAGTGCGACGCCTGCGACTACGAATCGAGGCACAAGATGAACCTGACACGCCACCTGACGACGCACAAGGATCCCTCGCAGCTCCGGATGTACAAGTGCAACGACTGCGACTACGAAACCACAAAAAGGGTGAACATCAAGTATCACGTGTTCAAGCACAGAGACCCGTCGCGCCTGCCAATGTACAAGTGCCACCTTTGCGACTACCAAGCGCAGCACAAGATAAACTATAACGGTCACATGCTGATGCACAAGGACGCGTCGCAGGTGCAAATGTTCCGGTGCGACTTGTGCGATTTCGAGACGAAGTACAGGAGGTCCTTGGGGCAGCACAAGCTGATTCACGAGGATAGTTCCGACGTGCCGACGTACTCATGCAAGTCATGCAACTTCCAGACGAAGTACAAGCGTAACCTGATAAGTCACGAACAGATCCACAGCAAGAAAGTACAGATGTATAAGTGCGACAAGTGCGATTTCGAGACGAGGCACAAGATCTATCTTCCGAGGCATCGGCAGAGACACGACAACCCCGAGGCGGACAGCCGCTAA
Protein Sequence: MTDFKNFACRLCLKTITNTNFEIIDDDIRNILSALLLELKRFENKELICNACNKKLNAAFDFKSMCRNTNKTVISNKDCENMLQLDLGAVYMKEKASDQLMDISCDQKVCGLCMQLVKSEFRCIREEELEAIQKFVPEMVIKVIKGPVVCKPCFDSLCTHNSFLKDCLEVEEKIRSTCDSSALESQSPSDLFVKIEQLGELCETDETEMSIKTECIEIKPELDEEDGHATPENSASRDLREVADKSKHDSGLVKKTKRSRSKSTPNQVPYKCGKCVYETKSESRFTAHYARHIKASAEYKKSLHMQLLQRVEPPAPPPQSYKCDYCNFETKYKCSVNRHQLIVHEKSLEVRSYKCSECDFETRNKYNLTKHLSTHDSISRAQKSEYKCESCDYKTNHKFAFKRHQQKHVSSAEAQNTDSSPQNHQLEHEETSIVTVYSCNDCHYKTKHRECLVRHMVTHRDSSVVRMFSCNDCDYKTKHKDCLKRHMVQHKDLTRVQMYKCDACDYESRHKMNLTRHLTTHKDPSQLRMYKCNDCDYETTKRVNIKYHVFKHRDPSRLPMYKCHLCDYQAQHKINYNGHMLMHKDASQVQMFRCDLCDFETKYRRSLGQHKLIHEDSSDVPTYSCKSCNFQTKYKRNLISHEQIHSKKVQMYKCDKCDFETRHKIYLPRHRQRHDNPEADSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -