Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:169838-171566[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.034 1 9.6 1.7 1 23 179 201 179 201 0.96

2 7 0.00061 0.019 15.1 1.3 2 23 205 225 204 225 0.97

3 7 8.7 2.7e+02 2.1 1.7 3 23 232 253 230 253 0.87

4 7 7.7e-05 0.0024 18.0 3.5 1 23 260 283 260 283 0.98

5 7 0.00017 0.0053 16.9 2.1 1 23 289 312 289 312 0.96

6 7 5.8e-05 0.0018 18.3 4.5 1 23 318 340 318 340 0.98

7 7 1.9e-05 0.00058 19.9 0.2 1 23 346 368 346 368 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.034	1	9.6	1.7	1	23	179	201	179	201	0.96
2	7	0.00061	0.019	15.1	1.3	2	23	205	225	204	225	0.97
3	7	8.7	2.7e+02	2.1	1.7	3	23	232	253	230	253	0.87
4	7	7.7e-05	0.0024	18.0	3.5	1	23	260	283	260	283	0.98
5	7	0.00017	0.0053	16.9	2.1	1	23	289	312	289	312	0.96
6	7	5.8e-05	0.0018	18.3	4.5	1	23	318	340	318	340	0.98
7	7	1.9e-05	0.00058	19.9	0.2	1	23	346	368	346	368	0.98

Sequence Information

Coding Sequence: ATGGAAATGGATGGAAATATAATATGCCGCCTTTGTTTAGACGTGGTTCCCACAGGATATacgattttcaaagaaaatattcaaaacacaaTAAAAGTTCTAACCTCAATAGAAGTGTCTGTGAATGACAACCTGCCAAAACTGTCTTGTTcaaagtgtattttcaatttgtatttcattgaaaatatgAGGAATGTTATTCTTAAATCCGATGAAAAGCTTAGGACCATAATTAATAGGGATGGAAGTTTAAATGAACTTTTAAAAACCAGGCCGGTGATACAACTGCTTGAAGGTGAAAACTGCACTAACGTAGaggatttaaattttaaccacataGAAATTAAAGAAGAAATATTCAGTCCAGCAAATTCGTCTACCGATATTCCTGATAGTGACGCTTCTGGACATTGTGATAATAGTGGAATTAATTCATCTGAAGAAGTACCAGAAAAGACTTTTATCGAGGATGTACTCGATGAAAAcgatataaaaaagataatataCAGGAAGGACAATAATAAACCTTACTTATACCACTGCAATGTGTGCAATGTAGACTTCCGGGGAAACGTGCTATACATGAGACATAAAGGCAAGCACATAAAGAAGACTTGTGAGATTTGTGGCGTGACGACTAGGCAGGACAATTTCAATAAACACATGACGAAACATAAATTGGGACAACAGATTTGTGATATATGCGGCAGTATCCATAAAAGCTTGGAAGGTCTGAGGAcgcatttatttcattttcacaATGCGAAGAAAAAGCCTTATACTTGCGGGGAGTGTGGGGAATCGTTTAAATACAGTCACCGATTAACATATCACAAACGGAAAATCCATACAGGTTTTCGTCCACACCAGTGCGACACATGCGGGAAGCGGTTTTTCGACCTGGGCACgatgaaaaaacacgtaaagtTGATCCACCTGAAATTACGCGAGTACCACTGCAAATACTGCCAAAAAGATTATTCGTCACAGTACGCTCTGAAGGTACACACGCGACAGCACACAGACGAGACCCCGTACATATGTGAAATATGTACCGAAGGGTTCCGGCAGTTGGTTTCTTTGAAGACTCACATGGCGAAACACGAAAGGACGTCAACTAGGAAGAGTGAAGTCGAACGTCGAGAGGCGGAAGAGGTTAAGATTGAAACGGTTGGCCTAAGTTAA
Protein Sequence: MEMDGNIICRLCLDVVPTGYTIFKENIQNTIKVLTSIEVSVNDNLPKLSCSKCIFNLYFIENMRNVILKSDEKLRTIINRDGSLNELLKTRPVIQLLEGENCTNVEDLNFNHIEIKEEIFSPANSSTDIPDSDASGHCDNSGINSSEEVPEKTFIEDVLDENDIKKIIYRKDNNKPYLYHCNVCNVDFRGNVLYMRHKGKHIKKTCEICGVTTRQDNFNKHMTKHKLGQQICDICGSIHKSLEGLRTHLFHFHNAKKKPYTCGECGESFKYSHRLTYHKRKIHTGFRPHQCDTCGKRFFDLGTMKKHVKLIHLKLREYHCKYCQKDYSSQYALKVHTRQHTDETPYICEICTEGFRQLVSLKTHMAKHERTSTRKSEVERREAEEVKIETVGLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01015117;
90% Identity: -
80% Identity: -