Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:488-5467[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.003 0.093 12.9 3.9 1 23 316 340 316 347 0.95

2 12 0.28 8.6 6.8 4.6 1 23 353 375 353 375 0.97

3 12 0.08 2.5 8.5 1.2 1 23 384 406 384 406 0.98

4 12 0.019 0.59 10.4 3.3 1 23 415 437 415 437 0.99

5 12 0.002 0.061 13.5 2.9 1 23 446 468 446 468 0.97

6 12 0.0051 0.16 12.2 5.2 1 23 477 499 477 499 0.98

7 12 0.13 3.9 7.9 4.9 1 23 508 530 508 530 0.98

8 12 0.002 0.061 13.5 4.1 1 23 539 561 539 561 0.99

9 12 0.0033 0.1 12.8 2.8 1 23 570 592 570 592 0.99

10 12 0.00022 0.0066 16.6 1.7 1 23 601 623 601 623 0.98

11 12 0.00069 0.021 15.0 4.4 1 23 632 654 632 654 0.98

12 12 0.00064 0.02 15.1 5.3 1 23 663 685 663 685 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.003	0.093	12.9	3.9	1	23	316	340	316	347	0.95
2	12	0.28	8.6	6.8	4.6	1	23	353	375	353	375	0.97
3	12	0.08	2.5	8.5	1.2	1	23	384	406	384	406	0.98
4	12	0.019	0.59	10.4	3.3	1	23	415	437	415	437	0.99
5	12	0.002	0.061	13.5	2.9	1	23	446	468	446	468	0.97
6	12	0.0051	0.16	12.2	5.2	1	23	477	499	477	499	0.98
7	12	0.13	3.9	7.9	4.9	1	23	508	530	508	530	0.98
8	12	0.002	0.061	13.5	4.1	1	23	539	561	539	561	0.99
9	12	0.0033	0.1	12.8	2.8	1	23	570	592	570	592	0.99
10	12	0.00022	0.0066	16.6	1.7	1	23	601	623	601	623	0.98
11	12	0.00069	0.021	15.0	4.4	1	23	632	654	632	654	0.98
12	12	0.00064	0.02	15.1	5.3	1	23	663	685	663	685	0.98

Sequence Information

Coding Sequence: ATGCAACCAGAAaacattaaagaaatattttgcagACTGTGTGGTAATATCATAAGCGAAACACATTGCGAAGTTATAGGAGAAGTCTTAAGGGAGGTTTTCGAGTTTGTTTTGCCCAATGTGAACTTGGAAGAGCGAGATAAACATGTAATATGTAAAACGTGCTCTGTAAAATTATCTGctgcttttaattttaagatgaGATGTAAGGATACTGAAGATATTATTTCTTCATTTGTTAATTCCAGTAAAGCATCAGTGGTTGACTTAAAAATGGTTTATATAAAGGGAAAAGGCAATATTCAGTCAGCTGATGTATCggaaaatcataaaatttgtCGATTATGTATTCAGTTGCTAACGGATGGATTTGTGTCACTAAATGAAGTGGATGTTGACATAATTGATGAGTTTATACCACACCTTAACCTCGCTGTTTCCAATGATCCCGTTATATGCGGACCATGTTTTGATTCGCTTCATACTCACCGGTGTTTTTTAAAGAACTGCCTTGATGCacaggaaaaatataaaagtgtcGATCGGCAGTTTCATATATCTGAAGAGATTGCTATAAAACTGGAAGGAGCTGGTCAAGATGTGCAGGAGATTCATGAAAGTATTTGTGAGCAGTCTTATATAAAATCTGAAGAGATTGCTATAAAACTGGAAGATGGTCAGGATACGCGGGAGAAATATAAATGGGTTGAACTGCAGTCTTGTATTAAATCTGAAGATATTGAAATAAAGGTAGAAGATGATCAGGAGGGtgatTTCCGATCATACGACTTAGGTGATGAAAGTGTTgaagtaaataatgaaaataaatgtgaaaCAGGATGTAACGAAGATTTTGTGACACCAATGTCCATTCACAACGACCAGATACCTAAAAGCAACAATTCTACAATTCAGAATTGTGAATCGTTCTTAGATACACAGTTGTACCAATGTggtttatgtaaatataaaactaGATTTAAGGCGAATTTGTATAGGCATCAGAGAATGCGCAAACACTTTTCCAGGAAGAAATCTTTTGCAGAAATTGAAATATTCAAATGTGATGTTTGTACTTATGAGACCAAACAGAAGAGACATTTGGAATTTCATAAGCTAACACATAAAAAACACTCACAAATCctaatgtacaagtgtgatactTGCACTTATCAGGCTAAATACATCAGTGTTTTGAAAAGACACCAGTTGTTGCATAAAAACTCTTcggaaatccaaatgtacaaatgtaaaTCGTGcagttatgaaactaaatataagagtCAAATAAAAGTGCAtcaattaaaacacaaaaaccTTTCAGAGATCCAAATGTACGCATGTCAGACGTGCAgttttaaaactaaatataaagaTTCTCTGAAGAGGCATCAGTTAATGCACAAAAGTATTTCAGAAATCCAAAAGTACAAGTGTAATACTTGTActtataaaactaaatttaagggTCACCTAAAAGAACATCTGTTATCACACAAAGGTCATTCAGGATTCCCAATGCACCAGTGTGATATGTGTAGTTATGAAACTAAATTAATGTCACATCTAAAATTGCATCAGTTGAAGCACAAGGACCCTTcggaaatccaaatgtacaagtgtagtATGTGCGATTTTAAGACTAAATATAAGTATACCGTAAACAGGCATCAGTTAACGCATAAAAATATTCCAGAAAACCAAGTGTACAAATGTGATATTTGTACTTACGGGACCAATTTTAAGAGATATCTAAGTCGGCACCAGTTAAAGCACAAGCACCCTCCAGAAAtacaaatgtacaagtgtgacaCTTGTCCCTATGTGGCTAGACGTAGGggacatttaaaaatgcatcagTTATCACACAAATTTCCTTCGGAAGTCCAAATGTACAATTGTGATACTTGTACctacgaaactaaatataaaagtcATCTCAAAAGGCATCAATTAATACACCAAAAACTTTCGAAAgtccaaatgtacaagtgtgatactTGTACTTACGAAACAAAATATAAGAGTCATCTCAAGAGGCATCGATTAATACACCAAGAACCCCTGTGA
Protein Sequence: MQPENIKEIFCRLCGNIISETHCEVIGEVLREVFEFVLPNVNLEERDKHVICKTCSVKLSAAFNFKMRCKDTEDIISSFVNSSKASVVDLKMVYIKGKGNIQSADVSENHKICRLCIQLLTDGFVSLNEVDVDIIDEFIPHLNLAVSNDPVICGPCFDSLHTHRCFLKNCLDAQEKYKSVDRQFHISEEIAIKLEGAGQDVQEIHESICEQSYIKSEEIAIKLEDGQDTREKYKWVELQSCIKSEDIEIKVEDDQEGDFRSYDLGDESVEVNNENKCETGCNEDFVTPMSIHNDQIPKSNNSTIQNCESFLDTQLYQCGLCKYKTRFKANLYRHQRMRKHFSRKKSFAEIEIFKCDVCTYETKQKRHLEFHKLTHKKHSQILMYKCDTCTYQAKYISVLKRHQLLHKNSSEIQMYKCKSCSYETKYKSQIKVHQLKHKNLSEIQMYACQTCSFKTKYKDSLKRHQLMHKSISEIQKYKCNTCTYKTKFKGHLKEHLLSHKGHSGFPMHQCDMCSYETKLMSHLKLHQLKHKDPSEIQMYKCSMCDFKTKYKYTVNRHQLTHKNIPENQVYKCDICTYGTNFKRYLSRHQLKHKHPPEIQMYKCDTCPYVARRRGHLKMHQLSHKFPSEVQMYNCDTCTYETKYKSHLKRHQLIHQKLSKVQMYKCDTCTYETKYKSHLKRHRLIHQEPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -