Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:356338-362364[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0022 0.069 13.4 1.7 1 23 252 274 252 274 0.97

2 12 0.0089 0.27 11.5 1.0 1 23 283 305 283 305 0.98

3 12 0.1 3.1 8.1 1.6 4 23 345 364 345 364 0.95

4 12 0.011 0.34 11.2 0.6 2 23 374 395 373 395 0.97

5 12 0.011 0.33 11.2 2.4 1 23 403 425 403 425 0.93

6 12 0.055 1.7 9.0 4.4 1 23 438 460 438 460 0.99

7 12 0.00032 0.0099 16.0 6.0 1 23 469 491 469 491 0.98

8 12 5.5e-05 0.0017 18.4 4.5 1 23 500 522 500 522 0.99

9 12 9.6e-05 0.0029 17.7 1.0 1 23 531 553 531 553 0.98

10 12 0.0032 0.098 12.9 2.9 1 23 562 584 562 584 0.98

11 12 0.36 11 6.4 7.3 1 23 593 615 593 615 0.98

12 12 0.027 0.83 9.9 2.4 1 23 619 641 619 641 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0022	0.069	13.4	1.7	1	23	252	274	252	274	0.97
2	12	0.0089	0.27	11.5	1.0	1	23	283	305	283	305	0.98
3	12	0.1	3.1	8.1	1.6	4	23	345	364	345	364	0.95
4	12	0.011	0.34	11.2	0.6	2	23	374	395	373	395	0.97
5	12	0.011	0.33	11.2	2.4	1	23	403	425	403	425	0.93
6	12	0.055	1.7	9.0	4.4	1	23	438	460	438	460	0.99
7	12	0.00032	0.0099	16.0	6.0	1	23	469	491	469	491	0.98
8	12	5.5e-05	0.0017	18.4	4.5	1	23	500	522	500	522	0.99
9	12	9.6e-05	0.0029	17.7	1.0	1	23	531	553	531	553	0.98
10	12	0.0032	0.098	12.9	2.9	1	23	562	584	562	584	0.98
11	12	0.36	11	6.4	7.3	1	23	593	615	593	615	0.98
12	12	0.027	0.83	9.9	2.4	1	23	619	641	619	641	0.98

Sequence Information

Coding Sequence: ATGGGGAACTCTGAGAAAACGTGCAGGCTTTGCCTCAACGTCTTTGGCGACGGCAGCTTCAAAACAATAGATGGTACCATTAGAGAAGTTCTTGACGTTCTTCTGCTGAAGCTGAGCGTGGAAGATAATAAATCCGTAATATGTAATTCCTGTACCGTAAGACTGTTTGCCGCATTTCAATTCAAAGCAACTTGTATGGATACCGAAGACTGCATCTTTCCTTACGTTAATTCCGAAAAGAAGGAACCGGTAGACTTAATGGGCatttatttaaaggaaaaaGGTAAAGAACATTTAAAAGACAGCTTAGAAGATGAGAGGATTTGTCGGCTGTGTATGCAAGTAGTCCCTTGGGAGTTTACATCAGTGGAAGAAGTTGATGTTGATATGCTCCGCAAATATATTCCAGAAGTGAATTTCAGTTCCACCAAAGAACCCGTCTTGTGCAAAGTTTGCCACGATTCGCTAGGCACCCATACGAGTTTCTTAAACAATTGTATGGATGTGGAagagaaaataagaaatatgtgtAACAACAATGCGGCAGAGGGCCTGTCCTATATTAAAACTGAAGATGTTGAAATAAAACATGAAGAAAACGATGACGATAGtgaCGCACTGTTGGAAATCCCAGGAGACGAACGCGTGGACTACTCGAGCGAGTGTGGCCTAAGAGATACAGAAACAAAAAATCATAGGCTCGACAGTAAGAAGCACGAATCGAACCACAGCGATTCGACGCAGTTAAAAAAGTACAAATGTGACTCGTGCGATTACGAATCTGTCCGTAAGAAGAACCTTAGACAACACGAGTTCATGCACAAGGACATACCGGCATCCCGAAAGTACCAGTGTTACACCTGCGGTTTTGAAACCAAACGTAGAACCTCCATGGTGGACCACCAACTGGTACACCGGGACTTTTCCCAAGTACGAACTTTCAAGTACGATGTGTGCGATTACCAGACGATCCACGAATGCTCTCTCAAGAAGCACTCTTTAGTTCCCACGGATCCGTCCCAGAGAGAATCGCACAAATGCGACTACGAATCAGACCGTAAAATCAACCTCACTCGCCACCGGGAAAGACACGATGACCTGGTGCAGACGCGGATGTTAAAATGCGACACTTGCAGTTACGGAGCCAAGAGCAGGAGAACTCTAATCGCCCACCAGAAAAGCCACGAAGCGTCCACCGAGCAAATGTTCATGTGCAACACGTGCGGCTTCGAAACCAAGAACAAGCATTACCTCGTACGACATAACTTGGCACACGGGAAACCCGCAGAATACAAATCCCCCGTGAAGAAGTACAAGTGCGAATTCTGCCATTACGGGTCTTACGCTAAGGTGCACTTACAGCTTCATATGCTGAAACACGGGGACTGTCCCGACATACCGACGTACTCGTGCGGGAAGTGTGATTATAAAACGAAGCGGAAGTGCAACTTGAAGCGCCACCAACTGTCCCACCAAGACTTTTCCCAGGCACGCCAATACAAGTGCCACACGTGCGGTTTCCAAACCAAACAGAAGTCGAACCTCGGTCGTCACCAGCTCACGCACAAGGACACATCTGAGGTGTTGACTTACAAGTGCGACGTTTGCGGCATGGAGACCATTCACAAGTACAACTTCATAAAGCACCAGGCGATCCACAAGGATCGCTCGCAGGTACGGATGTACAAGTGCGACGTGTGCGACTTTGAAACGAAGCACAAGAGCAGCCTCGGGACGCACCGAGAGAAGCACACGATTCCTCGGGGAACGGAAACTTACAAGTGCCACCTTTGCGACTACGTAACCACCTGTAAGAAAAATTTGGCTACCCACCGGTTCAAGCATAAACCGTTGTATAGGTGCGATACTTGTGACTACGAGACTAAATGGAAGTTCCACCTCTCTCGGCACATGGTAGTACACGGTAGCTCTTCCAAGGAGCGAAAGCACAGGACCCACTAA
Protein Sequence: MGNSEKTCRLCLNVFGDGSFKTIDGTIREVLDVLLLKLSVEDNKSVICNSCTVRLFAAFQFKATCMDTEDCIFPYVNSEKKEPVDLMGIYLKEKGKEHLKDSLEDERICRLCMQVVPWEFTSVEEVDVDMLRKYIPEVNFSSTKEPVLCKVCHDSLGTHTSFLNNCMDVEEKIRNMCNNNAAEGLSYIKTEDVEIKHEENDDDSDALLEIPGDERVDYSSECGLRDTETKNHRLDSKKHESNHSDSTQLKKYKCDSCDYESVRKKNLRQHEFMHKDIPASRKYQCYTCGFETKRRTSMVDHQLVHRDFSQVRTFKYDVCDYQTIHECSLKKHSLVPTDPSQRESHKCDYESDRKINLTRHRERHDDLVQTRMLKCDTCSYGAKSRRTLIAHQKSHEASTEQMFMCNTCGFETKNKHYLVRHNLAHGKPAEYKSPVKKYKCEFCHYGSYAKVHLQLHMLKHGDCPDIPTYSCGKCDYKTKRKCNLKRHQLSHQDFSQARQYKCHTCGFQTKQKSNLGRHQLTHKDTSEVLTYKCDVCGMETIHKYNFIKHQAIHKDRSQVRMYKCDVCDFETKHKSSLGTHREKHTIPRGTETYKCHLCDYVTTCKKNLATHRFKHKPLYRCDTCDYETKWKFHLSRHMVVHGSSSKERKHRTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -