Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:88803-94275[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.2e-05 0.0016 18.5 3.4 1 23 323 345 323 345 0.98

2 13 0.0032 0.098 12.9 1.8 1 23 354 376 354 376 0.98

3 13 0.1 3.2 8.1 8.2 1 23 385 407 385 407 0.98

4 13 1.2 36 4.8 3.8 1 23 416 438 416 438 0.98

5 13 0.035 1.1 9.6 3.6 1 23 447 469 447 469 0.98

6 13 0.067 2.1 8.7 1.2 1 23 478 500 478 500 0.98

7 13 0.0087 0.27 11.5 3.1 1 23 509 531 509 531 0.98

8 13 0.0093 0.29 11.4 5.7 1 23 540 562 540 562 0.97

9 13 0.034 1 9.6 2.0 1 23 571 593 571 593 0.98

10 13 0.00057 0.017 15.2 5.2 1 23 602 624 602 624 0.99

11 13 0.00077 0.024 14.8 3.3 1 23 633 655 633 655 0.99

12 13 0.014 0.43 10.9 2.2 1 23 664 686 664 686 0.99

13 13 0.0099 0.3 11.3 5.3 1 23 695 717 695 717 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.2e-05	0.0016	18.5	3.4	1	23	323	345	323	345	0.98
2	13	0.0032	0.098	12.9	1.8	1	23	354	376	354	376	0.98
3	13	0.1	3.2	8.1	8.2	1	23	385	407	385	407	0.98
4	13	1.2	36	4.8	3.8	1	23	416	438	416	438	0.98
5	13	0.035	1.1	9.6	3.6	1	23	447	469	447	469	0.98
6	13	0.067	2.1	8.7	1.2	1	23	478	500	478	500	0.98
7	13	0.0087	0.27	11.5	3.1	1	23	509	531	509	531	0.98
8	13	0.0093	0.29	11.4	5.7	1	23	540	562	540	562	0.97
9	13	0.034	1	9.6	2.0	1	23	571	593	571	593	0.98
10	13	0.00057	0.017	15.2	5.2	1	23	602	624	602	624	0.99
11	13	0.00077	0.024	14.8	3.3	1	23	633	655	633	655	0.99
12	13	0.014	0.43	10.9	2.2	1	23	664	686	664	686	0.99
13	13	0.0099	0.3	11.3	5.3	1	23	695	717	695	717	0.99

Sequence Information

Coding Sequence: atggaAGGTTCTAAAGGACAATTTTGCCGTATTTGCAATAATACTGAGAGCAATGAAAATTTTACAGTGATAGACGAATCTATAAGGGAACTTTTAAAGACAGTTTCACTGAATCTGGACTCGGTGGACAACTATAAACATATCATGTGTTCTACTTGTTGTGCTAAATTGTACTCTGTGTGTGACTTTAAATTCACTTGTCTCTACGTTGAGGATAAGATTGTTTCTAATGTTAATCCCACAATGTCATTTGTTGATTTAAGAgaagtttatttaaaagaacACGATAACAAATCGTTAATTAAAATAGAAGATgatcagaaaatatgtcgattatGCTTGCAGCTGGTTAGCGAACAATTTGTGCCATTTTATGAAACGAAGTTAGAGATGATTGACAGATGCATTCCAGAAGTGAATTTTGGCCTAACGGAAGATCCAGTAGTTTGCAGGCAATGTTTTGATTCACTCATCATTCACGATACCTTCATAAAGACTTGTTTGGATGTTGAAAAGCAAATTCACAACATCTGTACCAACAAAATCATAGATTTTGAGTTTGGcgatacatttattaaaagtgAAACTGATGAAATAGATTTAGGAGATGAACAGAAGATGGAAGGGTtcatcgaaattaaaaaagagtTAAAGATGGAAGAAGCTCCCATTGAAACTAAAGAAGTCAACATAAAAGCTGAAGGAAATGATTGGGATAGtgaAGTCTCTTTGTGCACTTACACGGACGCAGCAGAAATAAAGAATGAACATATGGTTAAATGTGAGACAAAAGGACATCAAATAAGTGCACTTGAAGCTGCATTAAGCACACCATCGTGTAATAGTGAAAACAAAAATGAGTTTCATGGTGGTCTAGAACAGGAAGCTGCTCCGGGATTTATACATTGCAAGAAGAGCCCCACGCACAACCAGATAATAAGCAAAGGCTCTTCTGGAGGAAGAATGTATAAATGTGATATATGTACGTACGAAACTAAAGATAGGAGTCATTTGAAAAGGCATCAGTTGTTACACAAAGACCCTTCGGAAATTAAAATGTTCAAATGTGATACGTGTACTTATGAGAGTAAATACAAGAGTGCTCTGAAAATGCATCAATTATTACATAAAGATCCTTTGGAAAtcaaaatgtacaagtgtaatcTTTGTACTTATGAGACTAAACATAAGTATTGTTTGAAAGTGCATCAGTTCTCGCACAAAGAACCTTCtgaaatccaaatgtacaagtgtgatactTGTAGCTATGAAGCCAAGTATAAGAGAAGTCTAGAATGTCATCAATTAACCCACAAAGACCCTTCGGAGATCCACATGTACAAGTGTGACACTTGTAGTTATAAAACCATGTATAAGAGATATCTAAAATCGCATTTGTTGTCACACAAAGATCCTTTAAATATCCAAGTGTACAAGTGTGATGCTTGTAtgtatgaaactaaatataagagtGATCTAAAATTACATCAATTATCACATAAGTGCTCTTCAGAAGtcaaaatgtacaagtgtgatgcTTGTACTTATGTAACTAAACGTAAGAATTGTCTGAAAGCACATCAGTTATTGCACAAAAAACCTTCCGAAATCCAAATGCACAGATGTGAAACTTGTGGTCATGAAACCAAGTATAAGGGACATCTAAAAGTACATCAATTACTGCATAAAGACCTTGGCCAGATCCAGACGTACAAGTGTGACACTTGTAATTTTGAAACCAAGTATGAGAGATATCTAAAAATGCATCTGTTATTGCACAAAGACGTTTCAGAATTggaaatgtacaaatgtgacaTTTGTAGCTATGAAACCAGGCATAAGACATATCTAAAACGGCACCAATTAAAGCACAAAGATAATATCAAaattcaaatgtacaaatgtgacaCCTGTACGTatgaaactaattttaaaagcaACCTAAAATCACATCAGTTAAAGCACAAAGACCCTTCAGAAAcacaaatgtacaagtgtgatacatgtttttttgtaagtaaataTAAGAGTGCTATGGACAGACATCAGTTAACCCACAAAGACCTCtcagaaatccaaatgtacaagtgtgatacaTGTAGTTTTGAAACTAAACATAAGAGTAGTATCAAAAAACATCAGTTGACTCACATGAACCCTTCCACGGGAAGCGGGAATATGATACACGTTATTATaatgccattttga
Protein Sequence: MEGSKGQFCRICNNTESNENFTVIDESIRELLKTVSLNLDSVDNYKHIMCSTCCAKLYSVCDFKFTCLYVEDKIVSNVNPTMSFVDLREVYLKEHDNKSLIKIEDDQKICRLCLQLVSEQFVPFYETKLEMIDRCIPEVNFGLTEDPVVCRQCFDSLIIHDTFIKTCLDVEKQIHNICTNKIIDFEFGDTFIKSETDEIDLGDEQKMEGFIEIKKELKMEEAPIETKEVNIKAEGNDWDSEVSLCTYTDAAEIKNEHMVKCETKGHQISALEAALSTPSCNSENKNEFHGGLEQEAAPGFIHCKKSPTHNQIISKGSSGGRMYKCDICTYETKDRSHLKRHQLLHKDPSEIKMFKCDTCTYESKYKSALKMHQLLHKDPLEIKMYKCNLCTYETKHKYCLKVHQFSHKEPSEIQMYKCDTCSYEAKYKRSLECHQLTHKDPSEIHMYKCDTCSYKTMYKRYLKSHLLSHKDPLNIQVYKCDACMYETKYKSDLKLHQLSHKCSSEVKMYKCDACTYVTKRKNCLKAHQLLHKKPSEIQMHRCETCGHETKYKGHLKVHQLLHKDLGQIQTYKCDTCNFETKYERYLKMHLLLHKDVSELEMYKCDICSYETRHKTYLKRHQLKHKDNIKIQMYKCDTCTYETNFKSNLKSHQLKHKDPSETQMYKCDTCFFVSKYKSAMDRHQLTHKDLSEIQMYKCDTCSFETKHKSSIKKHQLTHMNPSTGSGNMIHVIIMPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -