Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:2687-6316[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.037 1.1 9.5 2.9 1 23 294 316 294 316 0.98

2 13 7.5e-05 0.0023 18.0 2.6 1 23 325 347 325 347 0.98

3 13 0.043 1.3 9.3 1.9 1 23 356 378 356 378 0.99

4 13 0.0004 0.012 15.7 3.0 1 23 387 409 387 409 0.99

5 13 0.0053 0.16 12.2 1.7 1 23 418 440 418 440 0.98

6 13 0.0022 0.067 13.4 1.9 1 23 457 479 457 479 0.98

7 13 0.0011 0.032 14.4 3.9 1 23 488 510 488 510 0.98

8 13 0.0011 0.034 14.3 4.3 1 23 519 541 519 541 0.98

9 13 0.00046 0.014 15.5 0.9 1 23 550 572 550 572 0.99

10 13 2.8 85 3.6 2.9 1 23 581 603 581 603 0.97

11 13 0.0051 0.16 12.2 3.5 1 23 612 634 612 634 0.99

12 13 0.00016 0.0049 17.0 1.0 1 23 674 696 674 696 0.99

13 13 0.39 12 6.3 7.3 1 23 704 726 704 726 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.037	1.1	9.5	2.9	1	23	294	316	294	316	0.98
2	13	7.5e-05	0.0023	18.0	2.6	1	23	325	347	325	347	0.98
3	13	0.043	1.3	9.3	1.9	1	23	356	378	356	378	0.99
4	13	0.0004	0.012	15.7	3.0	1	23	387	409	387	409	0.99
5	13	0.0053	0.16	12.2	1.7	1	23	418	440	418	440	0.98
6	13	0.0022	0.067	13.4	1.9	1	23	457	479	457	479	0.98
7	13	0.0011	0.032	14.4	3.9	1	23	488	510	488	510	0.98
8	13	0.0011	0.034	14.3	4.3	1	23	519	541	519	541	0.98
9	13	0.00046	0.014	15.5	0.9	1	23	550	572	550	572	0.99
10	13	2.8	85	3.6	2.9	1	23	581	603	581	603	0.97
11	13	0.0051	0.16	12.2	3.5	1	23	612	634	612	634	0.99
12	13	0.00016	0.0049	17.0	1.0	1	23	674	696	674	696	0.99
13	13	0.39	12	6.3	7.3	1	23	704	726	704	726	0.99

Sequence Information

Coding Sequence: ATGCACCCAGGAAACTTCAAAGAAACATTTTGCAGGCTTtgtcaaaatattataaaggaTACGAGTTACCAATTGGCAGGAGAAGTTCTAGAAACTGTGTTACCAACTCTGAATTTGGACGAAAGAGCTGAACATTTCATGTGTAAAGAATGTTCCATAAAATTACATGccgcttttaattttaaattgatgtgTATGGATACTGAAGATGTTATTTTTTCTCATATTAATGACAGTAAAATGTCGCTGGTTGATTTAAAAGATGTTTATGTAACGGAGAAGGGAAATCTCCAGTTGACTGATATacctaaaaatcaaaaaatttgtcGATTATGTATTCAGTATGTAACATTTGGATGTGCATCACTAAATGAAGTAGATATTGacataattaatacaaatataCCACGAATTAACCTCAGTGTTACCAGTAACCCTGTTATATGCGGGCCATGTTTTGATTCGCTTCGTACGCATggcgattttttaaagaaatgccTTGATACacatgaaaaatacaaaagtgcTGATAAGCAGTCTTATATTAAATCTGAAAAGATTGAAATAAAAGTGGAAGGTAGTCAAGATGGGCAAGAGAAATATAAAAGTATTAATGAGGGGTTTTATATTAAGTCTGAAGAGATTGAAATAAAGATAGAGGAAGACGATAGtaattCTTCACACAACCTAGAAGATGGAAgaagtgaaaataaaaacaggTGCATTTCGGAagatgtaaaagaaataaaggaggAATATAAATATGAGACAGGATTTAGCGATGACTGCACAATGTCAAAGTTAGTTCACAATGTTCAAATACCCAAAACCCAAATGTCTAGATTGCAAAAACCTGAACTTCTGTTAGATACCCGATTGTACCAATGTGataaatgtaaatttgaaaCTGAGTTTAAAAAGACTCTGAAAGAGCATAGATTAATGCACAAACATTTTTCAGAAATCCAAgtgtacaaatgtgataaatgtacTTATGTAACTAAATATAAATCTTCTCTAAACAGGCATCAGGTAATGCACAAATATCGTCGTGAAATCCAATTGTACAAATGTAGTACTTGTGCTTAtgaaactaaacttaaaaatcgTTTGGAAAGGCATCAATTAACACACAAAAATTCCTCAGAAATCGAAATGTACCAGTGTGATACATGTGGTTTTCAAACTAAATATAAGTACTATCTGAAGAGCCATCAGATAACACACAAAAATTCTTCAGAATTcgaaatgtacaagtgtgatgtCTGTAGTTTTCAaactagatttaaaaaatatctgagGGCGCAtctgttaatacataaaaattctAGGAAAATCCGAATGCACAACCCTtcagaaatccaaatgtacaagtgtgatacgTGTACTTTTGAAACTAAGTTTCAAAGCAGTCTAAGATCGCATCAAATAATACACAAAAACCCTTCGGAAATCCAAATGTTCAAGTGTGGTACATGTAATTATAAAACTAAACATAAGAATGATCTGAATGCACATCAGATAAAGCACAAGGACCCTTCAGAACTCCAAATGCACGAGTGTGATACATGTGGTTTTCAAACTAAATACAAGTACTATCTGAAGAGGCATCAGATAACACACAAAAATTCTTCAGAAATACAAATGTTTAAATGTGATATTTGTGcttttgaaactaaatataagtcTGGTCTAAACAGGCATCAGATAACTCACAAAGATGCTTGtgaaatccaaatgtacaaatgtggtACTTGTATTTATGAAACTAAACATAAGagttatataaaattacatcaGTTACTGCACAAAAGTTCTTCAGAAAtgcaaatgtacaaatgtgatgaATGTGGTTTTCAAACTAGACATAAGAACTATCTGGGGACGCATcagttaaaacataaaaattcttCGGAAGTCCAAATGTACAAATGCTGCTCTTGTATTTATGAAACTAAACATAAGAAATTTCTGAAACTGCATCAGTTAAAGCACAAAGATCCTTCTGAAATCcgaatgtacaagtgtgatacaTGTAGTTATGAAGCTAAACGTAAGACTAATTTGAGAGAACATATGTTAGTGCACAAAGACAAAAAGTACCAAGTGTACAAGTGTGATCGGTGTACTTATAAAACGAAATGTAAAAATAGTTTGAAAAGGCATCAGTTAACACATAAAAATTCTTCAGAAATGCAAATGTGA
Protein Sequence: MHPGNFKETFCRLCQNIIKDTSYQLAGEVLETVLPTLNLDERAEHFMCKECSIKLHAAFNFKLMCMDTEDVIFSHINDSKMSLVDLKDVYVTEKGNLQLTDIPKNQKICRLCIQYVTFGCASLNEVDIDIINTNIPRINLSVTSNPVICGPCFDSLRTHGDFLKKCLDTHEKYKSADKQSYIKSEKIEIKVEGSQDGQEKYKSINEGFYIKSEEIEIKIEEDDSNSSHNLEDGRSENKNRCISEDVKEIKEEYKYETGFSDDCTMSKLVHNVQIPKTQMSRLQKPELLLDTRLYQCDKCKFETEFKKTLKEHRLMHKHFSEIQVYKCDKCTYVTKYKSSLNRHQVMHKYRREIQLYKCSTCAYETKLKNRLERHQLTHKNSSEIEMYQCDTCGFQTKYKYYLKSHQITHKNSSEFEMYKCDVCSFQTRFKKYLRAHLLIHKNSRKIRMHNPSEIQMYKCDTCTFETKFQSSLRSHQIIHKNPSEIQMFKCGTCNYKTKHKNDLNAHQIKHKDPSELQMHECDTCGFQTKYKYYLKRHQITHKNSSEIQMFKCDICAFETKYKSGLNRHQITHKDACEIQMYKCGTCIYETKHKSYIKLHQLLHKSSSEMQMYKCDECGFQTRHKNYLGTHQLKHKNSSEVQMYKCCSCIYETKHKKFLKLHQLKHKDPSEIRMYKCDTCSYEAKRKTNLREHMLVHKDKKYQVYKCDRCTYKTKCKNSLKRHQLTHKNSSEMQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -