Agla000492.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:343653-348886[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.013 0.41 10.9 3.5 2 23 220 241 219 241 0.97 2 15 0.0026 0.079 13.2 4.2 1 23 250 272 250 272 0.99 3 15 0.0086 0.26 11.5 4.9 2 23 282 303 281 303 0.97 4 15 0.015 0.47 10.7 4.5 2 23 313 334 312 334 0.96 5 15 0.0011 0.033 14.4 4.8 1 23 343 365 343 365 0.98 6 15 0.014 0.42 10.9 3.3 2 23 399 420 398 420 0.97 7 15 0.026 0.8 10.0 7.4 2 23 430 451 429 451 0.97 8 15 0.085 2.6 8.4 3.6 1 23 491 513 491 513 0.96 9 15 0.018 0.54 10.5 5.3 1 23 522 544 522 544 0.98 10 15 0.0081 0.25 11.6 2.0 2 23 560 581 559 581 0.97 11 15 0.0052 0.16 12.2 2.2 2 23 591 612 590 612 0.95 12 15 0.00099 0.03 14.5 1.9 2 23 622 643 621 643 0.95 13 15 0.62 19 5.7 1.3 1 23 650 672 650 672 0.98 14 15 0.0084 0.26 11.6 0.4 2 23 680 701 679 701 0.97 15 15 0.012 0.37 11.1 6.2 1 23 710 732 710 732 0.99
Sequence Information
- Coding Sequence
- ATGCAAGCGATCACCCATGGGTTTACGTCGATAAAAGATGTAGGTGTTGATACGTTCCGCATATATATTCCAGAAGTGAACTTTAATTCCGTCAGAGAACCAGTTATATGCAAAGCTTGCCTCAATTCATTGGATAGTCACAcgagttttttaaaaaactgtttaagtATGGAAGAGATCAGAAATATTTCATGTGACGAAACCATAAAAAGTCCCCACCGTAGCATCAAAGAGGAAATTGAATTCAAATTTGAAGATTATAATTCTCCCTCGGAAGGTGAGCCTGTTGACTACACAAGTGACTGCAAACCTGAATATGCAGGAGCTACAAGTAGTTCTGTGCATCATACTCAAAAAGAACCGACACGAATCGATGGAGAAGACATTCGGTTAAAAGATGAACCACTTGACTACGTAAGTGACTACCAGTTTGATTATGCGGGATCTACAAGTAATTCTATACGTAATATCAAAAAAGAACCGACACGAATCGATGAAGAAGACTTTCAGGTAAAAGATGAACCCGTCGACAGCGAACGTGACTCCCAATCTGAATATGCGGGATCTACAAGTAATTCTATGTGTAATACCCAAAAAGAACCGACACAAGTTAAAGGGGAAGACTTTTGGGTGGATTCTTCTAAACAGCAGATGCTGAAATGTGATTTGTGCAATTATAAAATGGCTCACAAGCGGTATCTTGCACGACATCAACGAAAGCACAAAGTTTCCTCGATGGAGACGATGTATAAATGCGATTTGTGCGATTACAAAACCATTTATAAGCAACATCTCAAACTACATCAACTAAAACATAAAGACGTCTCTGAAGGGGAAATGTTGAAATGTGATTCATGCGATTATAAAACGAGACAAAAGAGATATCTTACACATCATCAACTGAGACACAAATACGTCCCGGAAGAGCAGATGTTGAAATGCGGTTTGTGCAATTATAAAACCGCTCATAAGCACTATCTTGCACGACATCAACAAAACCACAAAGTCTTCTCGAAGGAGCAGAAGTACAAATGCGAGTCCTGCGATTACAAAGCCAGACGAAAGGATCATCTTAGGCGACATAAGCTTAGACATAAAGACAACCCTGACGGGGAAATGTTGAGATACGATAACAGCGACATTTCCCAGAGCAACCGTACGCAGCATAAAGACATGCCTGAAGGGGAGATGTTGAAATGCGAGTCATGCGATTATAAAACCGGTCGAAAGCGCAATCTTATACATCATCGACTGAGACACAGATACATCCCCGAAGAACAGATGTTGAAATGTGATTTGTGCAATTATAAAACCGTTCATAAGCACCATCTCACCCAACATCTACTTAGACATAGAGCGGTTCTCGAGGAAAAGACATTGAAATGCGACTGCTGCGATTTCAAAACCATTTATAATCGCAGTTTTAGGCAACATCAACTAAAACATAAAGGCATCCCCGAAGAAGAAATGTTTAAGTGTGACTCGTGCAATTTTAaaaccatttataaaaacaatcttAAACAACACAAAGTGAAACATAAAGACGTCTCCGAAGGGGAAAGGTTTAAATGCGATTCGTGCAATTTTAAAACCATTCATAAGTACTACCTTAAGAGACATCAGGTAATGCACAAACTCGTCCCCAAAGAGCAGAATCTTCACATAAGCAAGATGCTGAAATGCAATTCGTGTGATTTCAAAACCATCTATAAGAACAACCTTACACAGCACCAAATCAAACACAAAGACGTTCCTGACGAGGAAATGCTGAAATGTGGCTTGTGCGATTATAAAACCGTTTATAAGCACTACCTTAAGAGACATCAGGCGTTACACAAGGTCGTCTCCGAGGAACAGATGTTGAGATGTGACTTGTGCGATTACAAAACCAATCGAAAGGACTACCTTACACGGCATCGGGTGAAACACGTGCCCGAggatcaaatatttaaatgctaCTCGTGTGATTTTAAAACCGTTTATAAGCAGTCTATCGCGCAACATCAACTTGTACACAAAGAAATCCTCGAGATGTTGAAGTGCGGTTCCTGCGATTATAAAACCAATTCTGTGGGCGGTCTGGCGCGGCATCAACGAAAACACAAAGCCGTCCGCGAGCGGCAAGAGTACAAATGCGATTCGTGTGGTTATAAAACCGTTTATAAGCACTGTCTTATacggcatcaactgaaacacaGTGGCAAAATTGTAGGCGAGCAGGATAGTCTTGCGACAGTAAGTCTTGTGTGTGATGCGGGTGTTACTGTTGATGCTTCAGAACGGACCAAACTAATttatgattcacaataa
- Protein Sequence
- MQAITHGFTSIKDVGVDTFRIYIPEVNFNSVREPVICKACLNSLDSHTSFLKNCLSMEEIRNISCDETIKSPHRSIKEEIEFKFEDYNSPSEGEPVDYTSDCKPEYAGATSSSVHHTQKEPTRIDGEDIRLKDEPLDYVSDYQFDYAGSTSNSIRNIKKEPTRIDEEDFQVKDEPVDSERDSQSEYAGSTSNSMCNTQKEPTQVKGEDFWVDSSKQQMLKCDLCNYKMAHKRYLARHQRKHKVSSMETMYKCDLCDYKTIYKQHLKLHQLKHKDVSEGEMLKCDSCDYKTRQKRYLTHHQLRHKYVPEEQMLKCGLCNYKTAHKHYLARHQQNHKVFSKEQKYKCESCDYKARRKDHLRRHKLRHKDNPDGEMLRYDNSDISQSNRTQHKDMPEGEMLKCESCDYKTGRKRNLIHHRLRHRYIPEEQMLKCDLCNYKTVHKHHLTQHLLRHRAVLEEKTLKCDCCDFKTIYNRSFRQHQLKHKGIPEEEMFKCDSCNFKTIYKNNLKQHKVKHKDVSEGERFKCDSCNFKTIHKYYLKRHQVMHKLVPKEQNLHISKMLKCNSCDFKTIYKNNLTQHQIKHKDVPDEEMLKCGLCDYKTVYKHYLKRHQALHKVVSEEQMLRCDLCDYKTNRKDYLTRHRVKHVPEDQIFKCYSCDFKTVYKQSIAQHQLVHKEILEMLKCGSCDYKTNSVGGLARHQRKHKAVRERQEYKCDSCGYKTVYKHCLIRHQLKHSGKIVGEQDSLATVSLVCDAGVTVDASERTKLIYDSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -