Agla008726.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:156376-160478[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.64 20 5.6 3.4 1 21 271 291 271 293 0.91
2 19 0.02 0.62 10.4 1.9 1 23 300 322 300 322 0.98
3 19 0.0056 0.17 12.1 5.3 1 23 331 353 331 353 0.98
4 19 3.6 1.1e+02 3.3 7.2 1 23 362 384 362 384 0.99
5 19 0.3 9.2 6.7 1.4 5 23 417 435 416 435 0.95
6 19 0.00028 0.0087 16.2 1.9 1 23 444 466 444 466 0.98
7 19 0.0085 0.26 11.5 2.5 3 23 477 497 476 497 0.99
8 19 0.00044 0.013 15.6 1.9 1 23 506 528 506 528 0.98
9 19 0.0041 0.12 12.5 2.4 1 23 537 559 537 559 0.98
10 19 0.0044 0.14 12.4 3.6 1 23 568 590 568 590 0.98
11 19 0.0021 0.064 13.5 2.0 1 23 599 621 599 621 0.99
12 19 0.0057 0.18 12.1 3.9 1 23 630 652 630 652 0.99
13 19 0.69 21 5.5 1.3 4 23 664 683 664 683 0.94
14 19 0.0066 0.2 11.9 6.7 1 23 692 714 692 714 0.98
15 19 0.058 1.8 8.9 5.7 1 23 723 745 723 745 0.98
16 19 0.011 0.35 11.2 1.4 1 23 754 776 754 776 0.98
17 19 0.0027 0.083 13.1 1.9 1 23 785 807 785 807 0.98
18 19 0.0076 0.23 11.7 4.7 1 23 816 838 816 838 0.98
19 19 6.6 2e+02 2.4 7.0 2 23 848 869 847 869 0.96

Sequence Information

Coding Sequence
ATGACCAGTGTTCAAGCAATTTCATGTAGGCTTTGCCTTAAATCCATAACCGATAAATGTTTTGTAGTAATAGGTAGTGTTACTAGAGACATTCTAGATGTTTTTATGCTGAAATTGaaattagaTACAGAGGGCAAAGAGTTTATATGTAATGCTTGCAGAAGAAAGTTATATGCAGTAGTAGATTTTAAGTCAACATGTCTCAAAACCGATACTACAATTATTCCATATGTGGattgggaaaaaatgttacagctcgACTTAAAAGAAGTGTACGTGAAGGAAAAGGGAAGTGACTTGTTAATGGATGTTTCTGAcagtcagaaaatatgtcgattgtgtatgcaGCCAGTAAATACTGAGGTTATGTGTATACGAGAAAAGGAACTTGAAGCTATTGAGAAATTGGTTCCTGAAATGaatataaatatcatcaaagatCCCGTTGTTTGTAAGCCATGTTTCGATTCCGTGTGCACTCACAatagttttctaaaaaactgcTTAGAAGTAGAAGAAAAAATTAGAGGTATTATTGACAGTTCAACAATAGAAATGAAAATGGATACTTCACCATCTGATTTATTCGTTAAAAGTGAAAACCTGGACAAAGAATTCGATATTATCGAGATGGAAATGTCAATTAAAGCTGAAATTGTGGACATAAAATCAGAAGATGAGGAAAGGagcGTCACACAGAATTCCAATAATGAGCCGTTCGAGGAGAGTGACTGTAAAGATGTAGAAgaagatttatgtaaacatgAGAATGATTCAGAAATGAGAACCAAGCGGAAGCATAAAGTATTGTATAAATGTGATAAATGTGTTTACGAAACTGAAAGCAAGAGCAGTTTTACAGCACACTGTGCGAAACACGAGAACTATTCGGAAGCGTATAAATGTGAATCGTGTAAGtttgaaactgaaaataagaaattacttcAGTGGCACCGGTTGAGGCATAAATCTTCCCCAGAACTACTTGTGTACCAGTGCAAATCATGTAATTACAAGACAAATCATAAATCCTACCTTGCTAAGCATCAGGTGAAACACAAAAGTGCATCTACAGCGCGATTGTACAAGTGTAGGTTTTGTGATTTCAAAACAAAGTGGAGGTCCAGCCTTCataatcattataaaaaacacaaaGACTCAAACAAATGTGACGAGTGTGATTGTAAAACCAAATACAGTGCATTGCTACATGAGGACACTTCACAACAGCCCAATTATAAATACAATGGTTGCGACTGCAAATCAAAAGATAAGACACTTTTTACCCGTCATCTGTTGATGCATAAAGATGTCTTGCAAGTCAAAATATATAAGTGTAAcaactgcgattatgaaactaaatacaaaggtAATTTGAAACTGCATCAGGTGaggcataaagatccttcacaagtTCAAATGCACGGGTGTGACcactgcgattacaaaactataTATAAGAGTCTTATGAACCGGCATCAATTAAAACATAAAGAttcttcacaggttcaaatgtacgcatgtaatgactgcgattacaaaactaaatatgaGAGTGACTTCAAACAGCACcagctgaaacataaagatctttctcaggttcaaatgtacaggtgtaacgaatGCAATTACGAAACTATATACAGGAGTTAtatcaaaaagcaccaactgaaacataaagatccttcacagattcaaatgtacagttGTAATGACTGCAATTACAAATCTAAATACAAGAGTACTATCAAACAGCATcagctgaaacataaagatccttctcaggttcaaatgtacaaatgtaatGTATGTGATTACGAAACTATATACAGGAGTTATATCAaaaagcatcaactgaaacataaagatcctactcaggttcaaatgtacaagtgtaacaaaTGCGATTACAAATCTATATATAGGAGTTAtatcaaaaagcaccaactgaaacataaagatccatcACAGATTCAAATGCACCAGAGTCACAATtgcgattacaaaactagaAGCGAAAGTGCTATGAAGCAGCATCAACTgcaacataaagatcctttgcaagttcaaatgtacagatgtaatgattgcaattacaaaactaaatacaagcaACATATCAAacggcaccaactgaaacataaagaatCTTCACAGTTTGAATTGTACACGTGTAACGATTGCAGTTACAGATCCAAATACAGGTGTGATGTCAAACGACACCAGctaaaacataaagatccttctcagGTACAAaggtacaggtgtaatgactgcgattttGAAACTATATACAGGGATTATATCAAAAGGCACCaagtgaaacataaagatccttcacagattcaaatgtacaggtgtaacgactgcgattatgaagcgaaatacaagagttatatcaaacaacaccaactgaaacataaagatccttcgcaagttcaaatgtacagatgtaaTGACTGCAATTACACAGCTAAATACAAGCACCTTATCAAacggcatcaactgaaacataaagattctTCTGAGGTTAAAATGTGCAGGTGTGACAATTGTGGTTACAAAACTATATGCAAACGTGATATGAAacggcatcaactgaaacataaaaagTCTTCTCAAGTTCAAATGTAG
Protein Sequence
MTSVQAISCRLCLKSITDKCFVVIGSVTRDILDVFMLKLKLDTEGKEFICNACRRKLYAVVDFKSTCLKTDTTIIPYVDWEKMLQLDLKEVYVKEKGSDLLMDVSDSQKICRLCMQPVNTEVMCIREKELEAIEKLVPEMNINIIKDPVVCKPCFDSVCTHNSFLKNCLEVEEKIRGIIDSSTIEMKMDTSPSDLFVKSENLDKEFDIIEMEMSIKAEIVDIKSEDEERSVTQNSNNEPFEESDCKDVEEDLCKHENDSEMRTKRKHKVLYKCDKCVYETESKSSFTAHCAKHENYSEAYKCESCKFETENKKLLQWHRLRHKSSPELLVYQCKSCNYKTNHKSYLAKHQVKHKSASTARLYKCRFCDFKTKWRSSLHNHYKKHKDSNKCDECDCKTKYSALLHEDTSQQPNYKYNGCDCKSKDKTLFTRHLLMHKDVLQVKIYKCNNCDYETKYKGNLKLHQVRHKDPSQVQMHGCDHCDYKTIYKSLMNRHQLKHKDSSQVQMYACNDCDYKTKYESDFKQHQLKHKDLSQVQMYRCNECNYETIYRSYIKKHQLKHKDPSQIQMYSCNDCNYKSKYKSTIKQHQLKHKDPSQVQMYKCNVCDYETIYRSYIKKHQLKHKDPTQVQMYKCNKCDYKSIYRSYIKKHQLKHKDPSQIQMHQSHNCDYKTRSESAMKQHQLQHKDPLQVQMYRCNDCNYKTKYKQHIKRHQLKHKESSQFELYTCNDCSYRSKYRCDVKRHQLKHKDPSQVQRYRCNDCDFETIYRDYIKRHQVKHKDPSQIQMYRCNDCDYEAKYKSYIKQHQLKHKDPSQVQMYRCNDCNYTAKYKHLIKRHQLKHKDSSEVKMCRCDNCGYKTICKRDMKRHQLKHKKSSQVQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-