Agla009264.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:951258-960173[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00017 0.0052 16.9 3.7 1 23 187 209 187 209 0.98 2 18 0.03 0.92 9.8 6.1 1 23 218 240 218 240 0.98 3 18 0.0056 0.17 12.1 2.8 1 23 249 271 249 271 0.98 4 18 0.011 0.32 11.2 4.6 1 23 280 302 280 302 0.99 5 18 0.031 0.94 9.8 6.9 1 23 311 333 311 333 0.98 6 18 0.026 0.79 10.0 5.9 1 23 342 364 342 364 0.98 7 18 0.015 0.47 10.7 0.8 1 23 580 603 580 603 0.95 8 18 0.046 1.4 9.2 4.1 1 23 612 634 612 634 0.97 9 18 0.016 0.51 10.6 3.0 1 23 643 665 643 665 0.99 10 18 0.27 8.3 6.8 4.4 1 23 674 696 674 696 0.98 11 18 0.00093 0.029 14.6 1.6 1 23 705 727 705 727 0.98 12 18 0.011 0.34 11.2 3.5 1 23 736 758 736 758 0.99 13 18 0.045 1.4 9.3 4.9 1 23 767 789 767 789 0.98 14 18 0.0046 0.14 12.4 3.5 1 23 798 820 798 820 0.99 15 18 0.009 0.28 11.5 3.7 1 23 829 851 829 851 0.98 16 18 0.0018 0.055 13.7 3.1 1 23 860 882 860 882 0.98 17 18 0.00063 0.019 15.1 1.8 1 23 891 913 891 913 0.98 18 18 0.31 9.4 6.6 4.2 1 23 922 944 922 944 0.97
Sequence Information
- Coding Sequence
- ATGAAGGAAGAGAAAAGCGAGTTGAAGGATATTTCAGACAGTCAGAAAATGTGTCGATTTTGTACACACCCAGTGAAATGTGAATCTAAATGCATGTACGAAGAGGAACTGGAAGCTATTCAGAAATTGACTCCTGAAGATATAATCAGCATCAAAGATACTGTTGTATGTAAGGAATGCTCTGATTCCTCGTCCACTCACAACTTCCCAAAAAATTGCTTAGAAGTAGATAGTTCAGTCATGGAAGGTCGAAAAGAGACGTCACTATCTGATTTATTCATTAAGACTGACAAGCTGGATGAGAAATTCGATTTTAACAAGATGGAAATATCGATAAAAACCGAATGTGTTGACATAAAATCGGAAGATGACATGAGtgaagTTCTACCACAGAGTTGCAATGAGGGACTATACGAGAGGAGTGACTGTAAAGACGCAGAAGAGGATGGATACAAATATAATACTTATGTTTATGAAACCAAATACAACACGTTACCACATAACGATGCTTACAGGAATGATATCACACAGCACGAACTGGAACATAAAGTTGAAATGTATGagtgtaacgactgcaattacAAAACCAAATATAGGAGTTATCTCAAACAACACCAATTGAAACATAAAGACCCTTCGCAGGTTCAactgtacaagtgtaacgattgcgatttcaaaactaaataccGGAGACATATCAGAtcacaccaactgaaacataaagatccttcggagattcaaatgtacaagtgtaacgactgcaattTTGAAAGTAGATACAAGAAGAATATCCAACAGCACCAAATCAAACATAAAGAttcttcacaggttcaaatgtacaagtgtaacaacTGTGGCTACAAAGCTAAACACATGAAGAACATCAAacggcaccaactgaaacataaagattctTCACAGGttgaaatgtacaagtgtaacgactgcaattacaaaactaaatacaaatgtaaTATCAAAAAGCACCAAGTGAAACATGAAGACCGTGCTCAGgctcaaatgtacaagtgtaacgtcTGCGATCATGAAACTAAGTACAAAggtaatatcaaaaaacatcacctgaaacataaagatcctttaCAACATATACGTATTGCGAAAAAGTTACAGTTTGACATGAAGGAAGAGAGAAGCGAGTTGATGGATATTTCAGAcagtcagaaaatatgtcgattgtgtacGCTTCCGGTAAAAAGTAAGTTTACTTGCATACGTGAAGAGGAACACGAAGCTATTCAGAAATTGACTCCCAAAATGAATATAAGTACAAACAAAGATCGTGTTGTATGTAATGAATGCTTTCATTGCTTACGCACTCAATacagtttcctaaaaaattgccTGGAAGTAGATAGTTCAGCCACAGAAGACCGAAAAGAAACATCACTATCTGATTTATTCGTTAAGACTGAAAACCGGGATGAAGAATTCGTTAATAATGAAATGGAatcgttaataaaaactgaatgtGTCGACATAAAATTGGAAGATGAGGAAAGGAGcgACGCGTTACTGCAGAGCTCCGATAATGAACCATCCGAGAATACTGACTGTAAAGATGTAGTAGATGGATGTAAACATGAGAATGGATCAGAAACGAAAACCAAGCAAGAGCACAAAGtattgtacaaatgtgataagTGTATTTACGAAACTGGAAGTAAGATCCGGTTTACGGCACACTGTTTGAGACATGAGAAAGATTTAGAAGCATATAAATGTGAAACATGTGAGTATGAAGCTGACAATAAGAAATCATTTCGGAGGCACCTATTGTTGgggcataaagatccttcgaaGGTCCAGATGTACAAGTGTAAagactgcgattatgaaacaAAACACAAGAGCTATATCAAAccgcaccaactgaaacataaagatccttctcaagttcaaatgtacaagtgcgGTAACTGTGATTTTGAAACGAAATACAAGAATACTTTCAAAgtgcaccaactgaagcataaagatccttctcagattcaaatgtacagatgtaacAGCTGCAGTTACACAAGTAAATACAAGAATTatatcaaacagcaccaactgaagcataaaaatCCTTcagaggttcaaatgtacagatgtaacgactgcgattatgaaagtaaatacaaaggtgatatcaaaaagcaccaactgaaacataaagatcatTCGCAGGTCCAAACATACAAGTGTAATGACTGCGTTTATGAAACTAGGCACAAGACGGATATCAAACGGCACctactgaaacataaagatccttcacaggttcaaatgtacatgTGTAATGACTGCAATTACAAAACTGAGTACAGATATTGTATGGAacgacaccaactgaaacataagcATCCTTCTCAGGttgaaatgtacaagtgtaacgactgtagttacgaaactaaatacaagagctATATCAAgcagcaccaactgaaacataaagatccttcgcagcttcaaatgtacaggtgtaacgactgcgattttgAAACCAAATATAGGAAGTATATCAAacggcaccaactgaaacataaagatccttcgcaggttcaaatgtacaggtgtaacaacTGCAATTACAAAACTGAGTACAGAAATTATCTGAGACGACACCAGCTggtacataaagatccttcgcagattcaaatgtacaggtgtaacaacTGCGATTACGCAAGTAAATCAAAGAGTGGTATCAaaaagcatcaactgaaacataaagatccttcacaggttcaaatgtacaggtgtaatgactgtgaTTTCGAAACGAAATACAAGAGCAATATCACATGTCACCTATTGAAGCATAGAGAGTCTTCTTAA
- Protein Sequence
- MKEEKSELKDISDSQKMCRFCTHPVKCESKCMYEEELEAIQKLTPEDIISIKDTVVCKECSDSSSTHNFPKNCLEVDSSVMEGRKETSLSDLFIKTDKLDEKFDFNKMEISIKTECVDIKSEDDMSEVLPQSCNEGLYERSDCKDAEEDGYKYNTYVYETKYNTLPHNDAYRNDITQHELEHKVEMYECNDCNYKTKYRSYLKQHQLKHKDPSQVQLYKCNDCDFKTKYRRHIRSHQLKHKDPSEIQMYKCNDCNFESRYKKNIQQHQIKHKDSSQVQMYKCNNCGYKAKHMKNIKRHQLKHKDSSQVEMYKCNDCNYKTKYKCNIKKHQVKHEDRAQAQMYKCNVCDHETKYKGNIKKHHLKHKDPLQHIRIAKKLQFDMKEERSELMDISDSQKICRLCTLPVKSKFTCIREEEHEAIQKLTPKMNISTNKDRVVCNECFHCLRTQYSFLKNCLEVDSSATEDRKETSLSDLFVKTENRDEEFVNNEMESLIKTECVDIKLEDEERSDALLQSSDNEPSENTDCKDVVDGCKHENGSETKTKQEHKVLYKCDKCIYETGSKIRFTAHCLRHEKDLEAYKCETCEYEADNKKSFRRHLLLGHKDPSKVQMYKCKDCDYETKHKSYIKPHQLKHKDPSQVQMYKCGNCDFETKYKNTFKVHQLKHKDPSQIQMYRCNSCSYTSKYKNYIKQHQLKHKNPSEVQMYRCNDCDYESKYKGDIKKHQLKHKDHSQVQTYKCNDCVYETRHKTDIKRHLLKHKDPSQVQMYMCNDCNYKTEYRYCMERHQLKHKHPSQVEMYKCNDCSYETKYKSYIKQHQLKHKDPSQLQMYRCNDCDFETKYRKYIKRHQLKHKDPSQVQMYRCNNCNYKTEYRNYLRRHQLVHKDPSQIQMYRCNNCDYASKSKSGIKKHQLKHKDPSQVQMYRCNDCDFETKYKSNITCHLLKHRESS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -