Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:59864-71579[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0019 0.058 13.6 4.7 1 23 380 402 380 402 0.99

2 11 0.0022 0.066 13.4 2.4 1 23 411 433 411 433 0.98

3 11 9.5e-06 0.00029 20.8 4.3 1 23 442 464 442 464 0.99

4 11 0.00026 0.0079 16.3 3.9 1 23 473 495 473 495 0.98

5 11 0.078 2.4 8.5 2.2 1 19 504 522 504 526 0.96

6 11 0.017 0.52 10.6 7.5 1 23 535 557 535 557 0.99

7 11 0.019 0.6 10.4 0.8 1 23 566 588 566 588 0.98

8 11 0.0098 0.3 11.3 3.4 1 23 597 619 597 619 0.98

9 11 0.0024 0.074 13.3 3.4 1 23 628 650 628 650 0.99

10 11 0.00029 0.0089 16.2 0.8 1 23 659 681 659 681 0.98

11 11 0.094 2.9 8.3 4.7 1 23 690 712 690 712 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0019	0.058	13.6	4.7	1	23	380	402	380	402	0.99
2	11	0.0022	0.066	13.4	2.4	1	23	411	433	411	433	0.98
3	11	9.5e-06	0.00029	20.8	4.3	1	23	442	464	442	464	0.99
4	11	0.00026	0.0079	16.3	3.9	1	23	473	495	473	495	0.98
5	11	0.078	2.4	8.5	2.2	1	19	504	522	504	526	0.96
6	11	0.017	0.52	10.6	7.5	1	23	535	557	535	557	0.99
7	11	0.019	0.6	10.4	0.8	1	23	566	588	566	588	0.98
8	11	0.0098	0.3	11.3	3.4	1	23	597	619	597	619	0.98
9	11	0.0024	0.074	13.3	3.4	1	23	628	650	628	650	0.99
10	11	0.00029	0.0089	16.2	0.8	1	23	659	681	659	681	0.98
11	11	0.094	2.9	8.3	4.7	1	23	690	712	690	712	0.98

Sequence Information

Coding Sequence: ATGCAaccacaaaattataaaaagacaGTTTGCAGATTGTGTCTTAATATTATAAGCGATACTAATGATAAAGTAATAGAAGAAGCCCTAAGGGAAATTCTAAAGTTTACTTTGCCGAACCTAGGTTTGGGGGAGAGAGACAAACAGTtcatgtgtaaagtgtgttctGTGAAATTATTCGCTGCTTTCAATTTTAAGTCGGCATGTATGGGTGCCGAGGATATTATATCTTTATATGTTAATGCCAGTAAAGCAATTGACTTAAAGGAAATTTATCTAGAGGAGAATGGAAATATTCAGTTAACTGATATATCAGAAAATGAGAGAATTTGTCGATTGTGTATTCAGTTGGTAACACGTAGATCTGTGTCATTGAATGAAGTTGATGCGGATATAATCGATACATATATACCACAAGTAaaCTTCAGTATTACCAATGACCCCGTTTTGTGTGGATCATGTTTTGATTCACTTTGTACTCATGGCACGTTCTTAAATAACTGCATTGATGCACAGGAGAAACATAAAAACGAACAGTTTTGTATTAAAACTGAGAAGATTGCAATAAAACTGGAAGAAGATGGTCAAGATGAACAGGTGAAATATAAAACTGTTGAAGAGGAGCCTTTTAAATCTGAAGAAGCTGAAATAAAACTGGAAGAAGATGAACAAGACAAATATACAGAGATTGATAAGCCGTCTTATATTAAACCCGAAGAGACTGAAGTAAAATTGGAAGAACATGACGCTCAGGAGAAATATAAAAGTGTTGATAAGCAGTCTATTAAATCTGAAGAGATTGAAATAAAGGTAGAGGAATGTGACCAGAACGGtgatttCACCTCATATGATTTATATAATGAagcaattgaaaataaaaagcacACTTATCAAGCTGaaggagaaataaaaaatgaatatgtgTGTAAATGTGAGACAGAAGAAATTCAAATGAACAAACATGAAACTCTATTAGATAAAACACCACATAAGAGTGGAAATAAAAGAAAGCTGACGGGCAGTTTACCACACGAAATTGCTCCAAAACTAAAGAAGTACAAACAGGATAAATTTGTACATGGTACTAATTACAACAATAGTTCTACGTGTCATGAGGATGCTTCTAAAGCACAAATGTATAAATGCAGTATGTGTGCTTACGAAACTAAACATAAGGGCCATCTGAAGGTGCACCAGTTAACGCACAAAGACCCTTCtaaaatccaaatgtacaagtgtgaggTATGCAGCTATGAAAGTAAATATAAGGGACATCTAAAAGACCATCAGTTATTGCACAAAGACCCTTCGGAAATAAAAATCTACAAGTGTGATACgtgtaattacaaatttaagCGGAAGGGTCATCTGAAGGCCCATGAGTTAACACACAAAAACCCTTCTGAAATCCAAATGTATAAATGCGATACATGCAGTTACGAAACTAAACAAAAGAGTCATCTGAAAGTGCATCAGGTAACCCACAAAAACACTTCGGAAATCCAAACGTACAAGTGTGATAGATGTAGTTTTGAGACTAAACGTAAGAGTTACCTGAAAGAGCACGACGTATCGCATAAAGACCCCTCGGAAGTTCAAATGTATCAGTGTGATGTGTGTAAGTTCAAAACTAAGTACAAAAAATGCCTAAAGAGGCACCAGTTAAAGCACAAAGACCCTTCAgaaattcaaatgtacaagtgtgatatgTGCACTTATGAATCCAAATATATGAGGGGCTTAAAAGTGCATCAGTTAATACACAAAGACCCCTcggaaatccaaatgtacaagtgtgacaCTTGTacttacgaaactaaatttaagGATAAGCTAAACAGACATAAGGTAACACACAAAAACATTTCAGAAACCCAAACTTACAAATGTGATGCATGTGGATATGAAACTAAACATAAGAGATATCTCAAAGATCATCAGTTAAGACACAAAGATCCTtcagaaatccaaatgtacCAGTGTGACATTTGCACTTATGAAACCAAGTATAAGAGTGGTCTAAAAGTGCATCAGTTATTGCACAAGGAACTTTCAGAGATCAGAATGTACCAGTGTGATATGTGCTGTTTTGAAACTAAGCAAAAGAGTAATCTGAAAGTGCATAAGCTAAGGCACAAAGACTCTTCttcaaaaatcgaaataaaCGAGTGTGATACATATAGTTGGGAAACTAAGTGA
Protein Sequence: MQPQNYKKTVCRLCLNIISDTNDKVIEEALREILKFTLPNLGLGERDKQFMCKVCSVKLFAAFNFKSACMGAEDIISLYVNASKAIDLKEIYLEENGNIQLTDISENERICRLCIQLVTRRSVSLNEVDADIIDTYIPQVNFSITNDPVLCGSCFDSLCTHGTFLNNCIDAQEKHKNEQFCIKTEKIAIKLEEDGQDEQVKYKTVEEEPFKSEEAEIKLEEDEQDKYTEIDKPSYIKPEETEVKLEEHDAQEKYKSVDKQSIKSEEIEIKVEECDQNGDFTSYDLYNEAIENKKHTYQAEGEIKNEYVCKCETEEIQMNKHETLLDKTPHKSGNKRKLTGSLPHEIAPKLKKYKQDKFVHGTNYNNSSTCHEDASKAQMYKCSMCAYETKHKGHLKVHQLTHKDPSKIQMYKCEVCSYESKYKGHLKDHQLLHKDPSEIKIYKCDTCNYKFKRKGHLKAHELTHKNPSEIQMYKCDTCSYETKQKSHLKVHQVTHKNTSEIQTYKCDRCSFETKRKSYLKEHDVSHKDPSEVQMYQCDVCKFKTKYKKCLKRHQLKHKDPSEIQMYKCDMCTYESKYMRGLKVHQLIHKDPSEIQMYKCDTCTYETKFKDKLNRHKVTHKNISETQTYKCDACGYETKHKRYLKDHQLRHKDPSEIQMYQCDICTYETKYKSGLKVHQLLHKELSEIRMYQCDMCCFETKQKSNLKVHKLRHKDSSSKIEINECDTYSWETK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -