Agla002945.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:305102-312158[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.7 53 4.3 3.3 1 23 256 278 256 278 0.93 2 18 0.00051 0.016 15.4 4.1 1 23 287 309 287 309 0.99 3 18 0.0089 0.27 11.5 2.8 2 23 319 340 318 340 0.97 4 18 9.4 2.9e+02 2.0 10.1 1 23 349 371 349 371 0.97 5 18 0.0056 0.17 12.1 1.7 2 23 381 402 380 402 0.97 6 18 0.0031 0.095 12.9 3.6 1 23 406 429 406 429 0.95 7 18 0.0017 0.051 13.8 2.7 2 23 439 460 438 460 0.97 8 18 0.0066 0.2 11.9 4.2 1 23 469 491 469 491 0.98 9 18 0.07 2.1 8.7 3.6 2 23 501 522 500 522 0.97 10 18 0.045 1.4 9.2 1.2 1 21 531 551 531 552 0.96 11 18 0.0011 0.034 14.3 1.1 1 23 565 587 565 587 0.98 12 18 0.035 1.1 9.6 1.5 2 23 597 618 596 618 0.96 13 18 0.0078 0.24 11.6 3.2 1 23 627 649 627 649 0.98 14 18 0.0004 0.012 15.7 3.6 1 23 658 680 658 680 0.99 15 18 0.23 7 7.0 9.1 1 23 689 711 689 711 0.99 16 18 4.6 1.4e+02 2.9 6.7 1 23 720 742 720 742 0.98 17 18 0.016 0.48 10.7 2.8 2 23 750 771 749 771 0.96 18 18 0.004 0.12 12.6 1.2 1 23 780 802 780 802 0.99
Sequence Information
- Coding Sequence
- ATGTACAAAGAGGAACCGTCCTGTAGGCTTTGCCTTAGTGTCGCGAACGACGAAAATGTCATGGTAATAGAAGAAACTATTGAAGAAGTTctagatgttcttttgctgaaattgaaCGAAAGAGAAAAGAACAAATCTATAATGTGCAATGCCTGTTCCATTAAATTGTTTGCGGCATTCAATTTCAAGGCAACGTGTACGGATACCGAGGACCGTATCTTTCCATACATCGATTCTGAAACGAGAACGCCGGTCGACCTAAGAGAAATTTATCTAAAGGAAAGAGGTAAAGAGCAtttaaaagatatattggaagACGAGAGGATTTGTCGATTGTGTATGCAAGTGGTCACCAATGGATTTACATCGGTAAAAGAATTGGATACCGATACACTCTGTCAATATATTCCTGAAGTGAATTTGACTTCTACCACAGATCCCGTTATATGCAAAGTTTGCCTTGGTTCGTTGAACACCCATATGACTTTCTTAAAGGGCTGTTTTAATGTGGaagagaaaattgaaaatatttctgacaACAAAACCATAGAAAGTCCGTTCCACATTCACTTAGAAGCTATTGAATTAAAATCTGAAGATCATAAgtcTCTCTCGGAAGATGAACTCCTTGACCGCGCAAGTGACAGCCGATCTGAAAATGTGGAAGCCACAAACAATTCTATGCATAAGCATAAAAGGAAGCCATGTTTGTCAAAGAAAACTAAACGTCCCTTGAAACGCACGAATTCCTCTGAGAACCGAATATATAAATGTGACTTCTGTGATTATAAAACCGTTAAAAAGAATCTTCTTATCTGTCATCTTGTTCGACACCAAGACGTCCCCGAAGAGCAGAAATTCAAGTGTCATTTGTGCAATTTTAAAACCGTTCGCAAGCAAGCTCTTCAACGACATCTGCTGACACACAAGATCGTCCCAGAAGAACAGATGTTGAAATGTCACTCTTGTGATTATAAGACCGGTCAAAAGAGGCTTCTTGCATCTCATATGCAACGGCACGAAAACATACCAGTAGAGCGGATGCACAGATGTGACCGGTGCGATTATAAAACTTTGCATAAGAACCATTTTACGCGACATCAGCTTAGACACAAAGATATCCCCGAAGAACAGATGTTGAAATGCCCTTCATGCGACTATAAAACCGTCTTTAAGCAGTACCTTAAAAATCACCAGCTCAGACACACAGACACTTATAAATGCGATTTGTGCGATTACAAAACCTTCAAAAAGGAGTACCTTAGACGTCATCAGCAGCTGAAACACACACACGTACCTGAAGAGCAAATGTTGAGATGCAATTTCTGCGATTACAAGACGGGTGATAAATATTACCTCAAACGCCACCAATCAAAACACAAAGTCATACCGGCAGAACAGATGCATAAATGCGATTTGTGTGATTATAAAACCATTTATAAGCAAAGCCTAAAACAACATCAGTTGAAACACAAAATCTTCACTGAAGATCAAGTGCTGAAATGTCATTTGTGCAGCTATGAAACTGTTTATAAGAAGAGTTTTAGAGTCCATCAGCTCAGACACAAGAACATCCCCGAAGAGCAGATGTACAAGTGCGATTCGTGTGAttataaaaccattttcaagCCCTACCTCACACAACATCAACAACGAAAAACAACAAGgaaaaatattcctaaaaatAGGAAATTTGAATGTGACTCATGCGACTATAAATCTGTTTCTAAGAACAATCTTATGCAACATCAACTCAAACACAAAGACATCCCCGAAGAACAGATGTTGAAATGTTATTCGTGCGATTATAAAACCGGTCGAAAGGATCGTCTTGCACGACATCAATTAAGGCACCGACTCTTCACCGAGGAGCAATTCTATAAATGCGATTCGTGTGATTATAAAACTATTGataaatatcgttttaaacGACATCTACTCAGGCACAAAGGCATCCTCAAAGAACAGGTGTACAAATGTGATTCCTGCGATTACAAAACCAGTCAAAAGAATTACCTTACAAAACACCAGCTGAAACACAAGGACATCCCCGAGGACCAGATGTTTAAATGCTGTTCATGCAGTTATAAAACTGTTAATAAATATCACCTTGCACACCATCAACTTACGCACAAGGACATCTCTGAGGAGAAAGGGTATAAATGTGATTCGTGCGATTTTAAAACTGATTATAAGCACTGTATGGTACAACATCAACTTAGACACAAAGAAATCCTCGAGATGTTGGAATGTGATTCCTGCGATTTTAAAACCCATTTTAAGGGTAATCTTGCGCGACATCAACGAAGACACAAGGCCTTCCGCGAAGGTGAGATGTACAAATGCGATTCGTGTGATTATAAAACCGTTTATAAGCCGTATCTTATACAACATCAACTGAGGCACAAAAACAACTCCGTGGGGTAG
- Protein Sequence
- MYKEEPSCRLCLSVANDENVMVIEETIEEVLDVLLLKLNEREKNKSIMCNACSIKLFAAFNFKATCTDTEDRIFPYIDSETRTPVDLREIYLKERGKEHLKDILEDERICRLCMQVVTNGFTSVKELDTDTLCQYIPEVNLTSTTDPVICKVCLGSLNTHMTFLKGCFNVEEKIENISDNKTIESPFHIHLEAIELKSEDHKSLSEDELLDRASDSRSENVEATNNSMHKHKRKPCLSKKTKRPLKRTNSSENRIYKCDFCDYKTVKKNLLICHLVRHQDVPEEQKFKCHLCNFKTVRKQALQRHLLTHKIVPEEQMLKCHSCDYKTGQKRLLASHMQRHENIPVERMHRCDRCDYKTLHKNHFTRHQLRHKDIPEEQMLKCPSCDYKTVFKQYLKNHQLRHTDTYKCDLCDYKTFKKEYLRRHQQLKHTHVPEEQMLRCNFCDYKTGDKYYLKRHQSKHKVIPAEQMHKCDLCDYKTIYKQSLKQHQLKHKIFTEDQVLKCHLCSYETVYKKSFRVHQLRHKNIPEEQMYKCDSCDYKTIFKPYLTQHQQRKTTRKNIPKNRKFECDSCDYKSVSKNNLMQHQLKHKDIPEEQMLKCYSCDYKTGRKDRLARHQLRHRLFTEEQFYKCDSCDYKTIDKYRFKRHLLRHKGILKEQVYKCDSCDYKTSQKNYLTKHQLKHKDIPEDQMFKCCSCSYKTVNKYHLAHHQLTHKDISEEKGYKCDSCDFKTDYKHCMVQHQLRHKEILEMLECDSCDFKTHFKGNLARHQRRHKAFREGEMYKCDSCDYKTVYKPYLIQHQLRHKNNSVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -