Agla013464.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:63249-67474[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 5.5 1.7e+02 2.7 0.2 2 19 335 352 334 354 0.92
2 17 0.011 0.33 11.2 2.2 1 23 361 383 361 383 0.98
3 17 0.0075 0.23 11.7 2.1 1 23 392 414 392 414 0.99
4 17 0.0082 0.25 11.6 8.2 1 23 423 445 423 445 0.98
5 17 0.027 0.84 9.9 3.9 1 23 454 476 454 476 0.99
6 17 0.021 0.63 10.3 5.0 1 23 485 507 485 507 0.99
7 17 0.079 2.4 8.5 4.6 1 23 516 538 516 538 0.98
8 17 0.0096 0.29 11.4 6.1 1 23 547 569 547 569 0.98
9 17 0.0017 0.051 13.8 3.7 1 23 578 600 578 600 0.98
10 17 0.01 0.32 11.3 1.8 1 23 607 629 607 629 0.97
11 17 0.0014 0.042 14.0 3.1 1 23 638 660 638 660 0.99
12 17 0.0033 0.1 12.8 4.4 1 23 669 691 669 691 0.98
13 17 0.093 2.9 8.3 3.2 1 23 700 722 700 722 0.97
14 17 0.002 0.06 13.5 3.8 1 23 731 753 731 753 0.98
15 17 0.00037 0.011 15.8 2.8 1 23 762 784 762 784 0.98
16 17 0.0073 0.22 11.7 2.1 1 23 791 813 791 813 0.98
17 17 0.066 2 8.7 5.8 1 23 822 844 822 844 0.99

Sequence Information

Coding Sequence
atgcAGCCGGGAAactatgaagaaatattttgcAGATTGTGTCTTAATACTGAAAGTGACAGAAATTACGAAATAATAGGGGAAGCCATAAAGAAAGCTCTACAAGCAGTTTTGCCGAATCTGAATTTGGAGGAGAACGATAAACATTTAATATGCAAAGCATGTTCCGTACAGTTATTGgctgcttttaattttaaatcgacATGTATGTGTACCGAGAGTATTATTTTTCCTTATGGTAATTCCAGTAAAGCGTCGCTTGTTGACTTAAAAGAAGTATATCTAAAGGAGAAAGGAACTATTCACTTAAACAGTATATCCgaaaatgaaagaatttgtcGGTTATGTATTCAGTTGATAATATCTGGATTTATGTCACTAAAGGAAGTAGACGTTAATTTAATTGATACATATATACCAGAAATTaACATCAGTGCTACCAGCGATCCTGTTATATGCGGACCCTGTTTTGATTCTCTTCACACCCATGGCGTTTTTTTAAGGAATTGTCTTGGTGCACaggaaatatataataaaaacatgGATAAGCAATCCTACGTTAAAACTGAAGAGATTGAAGTAAAACTGGAAGGTGATGGTTCAAATGCACTGGGGAGTAATACATGTGTCGTTAGACTGTTTGATATGAAATCCGAAATTACTGAAATAAAAGTAGATGATGATGAACAGGGGAAATGGGGACGTGTTAAGTCTTGTATTAAATTTGAAGATATTGAAATAAAGACAGAGAAAGACGATCAGGAAAGcaaTTCACTATTTGAAGCAaccgaaaacaagaggagatgcATTTCAGAGGATATAGGAGAAATACAGGATGAACATCTTACAACGTCTATGTCTGTTTCCAACATTCAAAGCGAAAAGTCTGAATTTCAAATGTGTGGGCCTTTGTTAGATATGCAATTCTTCCAGTGTGATAATTGTAAACTTACggcaaataagaaaatatacaaaaatccTTCAAAAGCGCAAATGTGTGTCAAGTGTGATGACTGCAGTTCTACAGCCTACTATAGGAGAAATTTGTCAGTACATAAGGATCCCTTAGAAGTGAGAAGGTACAGGTGTGATACATGTAGTTACGAAACTGAATATACGAGTCATCTGAAAGCACATGAGTTAACGCACAAAGACCCTTcggaaatccaaatgtacaagtgtgataccTGTGCGTATGAAactaagtataaaaaatatctaaaaattcaTCAATTAATGCATAAAGACCCTTCAGAAGTTCAGATGTATAAATGTGAAACatgtaattttgaaactaaacatAAGAGTTGTTTGAAAAGACATCAAATAAAGCATAAAGGCTCTTCGGAAATCAAAAAGTACAAGTGTGACGTATGTACTTATGAATCTAAATACccaaaatgtctaaaaatgcaTCAGTTAAAGCACAAAGACCCTtcagaaatccaaatgtacaaatgtgatacatgcagttatgaaactaaatataaggaTTGTCTAAAAGATCATCAGTTGAAGCACAAAGACCCTTTGGAAATCCAAATGCACAAGTGTGATACGTGTACttatgaaacaaaatttaagaaTAGTCTAAGATTGCATCAGTTATCGCACAAGGACCCTTCAGAAATtgaaatgtacaagtgtgaaaCATGCAGGTTTGAAACTAAGCACAAAGGCCATTTGAACAGACATCAGTTATTACACAAGGACCCTTCAGAAATCAatatgtacaaatgtgatactTGTAcctatgaaactaaatataaaggACATCTGAAAGTGCATCAGTTATCACATACTTCagatattaaaacatttatgtgTGATAGGTGTGGTTATGAAACCAATTTTATAAGCAACCTAAAATCGCACCAGTTTAAACACAAAGATCCTTCaaaaatccaaatgtacaagtgtgattcATGTAATTATGAAACCAAGTTTAGAAGCAATCTAAAATTGCATCAGTTAAAACACAAGGACCCTTCAGAAATCCAAATGCACAAGTGTGATGTGTGTAATTATGAAACTAAGTATAAAAGGGATCTAAAAACACATCAGTTGAAACacaaaaatccgtcaaaaatcCAAATATACAACTGTGACTCATGTACgtatgaaactaaatataaggaTTGTCTAAAAGATCACCAGTTAATACACAAAGACCCTTCGAAAACACAATCGTACACATGTGACACCTGCGattatgaaacaaaatataagAATCATCTAAGTAGGCATCAGTTATTACACAAGGACCCTTCAGAAATAAACATGTACAAATGCGATATTTGTACttatgaaacaaaatataagGGACATTTGAAAGTGCATCAGCTGTCACACACTTCAGAAATCAAGATATACAGGTGTGATACCTGTACCTATGAAACTAATTTTATAAGCAATCTAAAATCACACCagttgaaacataaagatccttcgaaaatccaaatgtacaagtgtgatacgTGCAGTTATGAAACCAAATTTAGATGTAATCTAAAATTGCATCAGCTTAAACACAAAGACCCTTCAGAAACACAATGA
Protein Sequence
MQPGNYEEIFCRLCLNTESDRNYEIIGEAIKKALQAVLPNLNLEENDKHLICKACSVQLLAAFNFKSTCMCTESIIFPYGNSSKASLVDLKEVYLKEKGTIHLNSISENERICRLCIQLIISGFMSLKEVDVNLIDTYIPEINISATSDPVICGPCFDSLHTHGVFLRNCLGAQEIYNKNMDKQSYVKTEEIEVKLEGDGSNALGSNTCVVRLFDMKSEITEIKVDDDEQGKWGRVKSCIKFEDIEIKTEKDDQESNSLFEATENKRRCISEDIGEIQDEHLTTSMSVSNIQSEKSEFQMCGPLLDMQFFQCDNCKLTANKKIYKNPSKAQMCVKCDDCSSTAYYRRNLSVHKDPLEVRRYRCDTCSYETEYTSHLKAHELTHKDPSEIQMYKCDTCAYETKYKKYLKIHQLMHKDPSEVQMYKCETCNFETKHKSCLKRHQIKHKGSSEIKKYKCDVCTYESKYPKCLKMHQLKHKDPSEIQMYKCDTCSYETKYKDCLKDHQLKHKDPLEIQMHKCDTCTYETKFKNSLRLHQLSHKDPSEIEMYKCETCRFETKHKGHLNRHQLLHKDPSEINMYKCDTCTYETKYKGHLKVHQLSHTSDIKTFMCDRCGYETNFISNLKSHQFKHKDPSKIQMYKCDSCNYETKFRSNLKLHQLKHKDPSEIQMHKCDVCNYETKYKRDLKTHQLKHKNPSKIQIYNCDSCTYETKYKDCLKDHQLIHKDPSKTQSYTCDTCDYETKYKNHLSRHQLLHKDPSEINMYKCDICTYETKYKGHLKVHQLSHTSEIKIYRCDTCTYETNFISNLKSHQLKHKDPSKIQMYKCDTCSYETKFRCNLKLHQLKHKDPSETQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-