Agla009752.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:79316-84172[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 5.4 1.6e+02 2.7 0.4 1 23 276 298 276 298 0.93
2 16 0.12 3.6 7.9 3.5 1 23 305 327 305 327 0.98
3 16 0.0016 0.048 13.8 2.0 1 23 367 389 367 389 0.98
4 16 0.00031 0.0096 16.0 3.7 1 23 418 440 418 440 0.98
5 16 0.001 0.031 14.4 2.3 1 23 449 471 449 471 0.98
6 16 0.0039 0.12 12.6 2.9 1 23 480 502 480 502 0.98
7 16 0.0036 0.11 12.7 4.5 2 23 512 533 511 533 0.96
8 16 0.024 0.73 10.1 2.4 1 23 542 564 542 564 0.98
9 16 0.00024 0.0075 16.4 4.0 1 23 573 595 573 595 0.98
10 16 4.5 1.4e+02 3.0 2.9 1 12 604 615 604 625 0.77
11 16 0.0016 0.05 13.8 2.6 1 23 634 656 634 656 0.98
12 16 0.0059 0.18 12.0 0.6 3 23 667 687 665 687 0.97
13 16 0.048 1.5 9.2 2.4 1 23 696 718 696 718 0.98
14 16 9.9e-05 0.003 17.6 4.0 1 23 727 749 727 749 0.98
15 16 0.044 1.4 9.3 4.7 1 23 758 780 758 780 0.98
16 16 0.00021 0.0066 16.6 2.2 1 23 789 811 789 811 0.99

Sequence Information

Coding Sequence
ATGTCTGGTGTTCAAGATACTTCGTGCAAGCTTTGCCTCAAAACTGTAACCGTAAATGGTTTTGAGGTAATAGACAACGTTACTAGAGATATTTTAGatgttcttttgctgaaattgaaatttgatagCGAAGGCAAAGaggttatatgtaacgtttgcaGAAGAAAGTTAAACGCAGCATTCGAATTTAAGGTAACTTGTCTGAAGACCGATTTCACAATTATTCCATATGTggattgtgaaaaaatgttacagctcgATATAAGAGACGTGTATACGAAGGAAAAGACAAACGACTCAATGGATGTTTCAAATggtcagaaaatatgtcgattgtgtatggAGCCAGTAGAGAGTGAATTTAGGTGTGTATGTGAAGGGGAACTTGAAGCTATCGAGAAATTGGCTCCTGAAATGaatataaatatcatcaaagatCCCGTTGTATGTAAGGAATGCTTTGATTATGTGTGCACCCACaacagtttcctaaaaaattgctTGGAAGTACAGGACAAAattaaaggtatttttaataacgcagCAACTGAAAGCCAGACAGATACGTCGCCATCCGATTTATTCGTTAAGACTGAAAACGAGGACAAAGAATTCGATATCAACGAGATGGAAATGTCGATCAAAGCTGAAAGTATCGACATAAAATCTGAAGATGAGGAAGGGAGcGACTTGCTACTGCAGAGCTCCGATAGTGAATCATTCGAGAAGAGTGTCCTTAGAGATGCAGAAGAGGATGAATGTAAACATGAGAATAGATCGACAAACCAATGTAATATGAAAGACAAGCAGGAtgacaaagtattttacaaatgtgataaatgtattTACGAAACTGGAAGCGAGAGCCGGTTTATAGCACACCGTGCGAGACACGAGAATGATTCGGAAGCATATAAATGCGAATCGTGTGAgtatgaaactgaaaataaaaaattttttcagaagcACCGGTTGAGGCATAAAGACTCTTCGGATACGCGTATGCACCAATGCGGATCATATGATTACAAGACAAGGCACAGGTGTGAGCTTGCTAAGAGTCAGGTGAAACACAAAAGCGCATCTAGAGGGCAATTGTATGAGTGTGACATTTGTGATTTCAAGACAAAACGGAAGGTCAGTTTTAATAGTCActatataaaacacaaaaactcGAACAATTGTGTAGAATATGACTATAAAACCAAATACACTGCATTACCAAATAAGGACACTTCACAATTGCCCATTTATAAATGCAATGGTTGCAAATACCAATCCAAGAATAAGAGAAACTTTACCAGACATCAGTTgatacataaagatccttcgcaggttcaaatgtacaggtgtaaggaCTGCGATTTTGAGACTAAATACAAGGGTGCTATGAAAAAACACCAACTTAAACATAAATATCCTTcacagattcaaatgtacaggtgtaaggaCTGCGATTTTGAAACTAAGTACAAGGATTATATCAAACGGCATCAACTACAGCATGGAGATGCTCCTCAGGTTCAATTGTGCGAGTGTAAggactgcgattacaaaactaaatacaaggctGATATGAAaaaacaccaactgaaacatacaGATCTTTCACAGGTTCAAAAGTACAGGTGCAATGACTgtgatttcgaaactaaatacaagaatgtCATGAAGAACcaccaactgaaacacaaaGACCCTTCGCAGGTTGAaacgtacaggtgtaacgactgcgattacaaaactatatacaaaaaatatctcaaaaagcatcaactgaagcataaagatccttctcagGTTCAGATGTACAAGTGTAGCTACTGCAATTATGAATGTAAATACAATGCTATCAAACTGCatgaactgaaacataaagatccttcgcaggttcaaatgtacaggtgtaaggaCTGTGactatgaaactaaatacaggagTTATATCCTAAGGCACcagctgaaacataaagatccttcacaggttcaaatgtacgggtgtaacgactgcgattaccaAACTAAATACAAGGGTGATATGAAAatacaccaactgaaacataaagatctttCACAGGTTCAAAAGTACAGGTGCAATGATTgtgatttcgaaactaaatacaaagaTATCATGAAgaaacaccaactgaaacacaaaGACCCTTTGCAGGTTCAAAcatacaggtgtaacgactgcaattacAAAACTATAAACAAGAAATATCTCAAAAGGcatcaactgaagcataaagatccctCACAGGTTcagatgtacaggtgtaacgactgcgatttcgaaactaaatacaaaagttgtatcaAACAACACCAACTGCAGCATAGAGATCCTtctcaggttcaaatgtacaggtgtaatgactgcgatttcGAAACCAAATACAAGGAGAATATCAAGCGGCATCAACTGACACATAGAGAAGGTGTACCGACTGCGATTATGAATCCAAATGCAGGAGTGgtataa
Protein Sequence
MSGVQDTSCKLCLKTVTVNGFEVIDNVTRDILDVLLLKLKFDSEGKEVICNVCRRKLNAAFEFKVTCLKTDFTIIPYVDCEKMLQLDIRDVYTKEKTNDSMDVSNGQKICRLCMEPVESEFRCVCEGELEAIEKLAPEMNINIIKDPVVCKECFDYVCTHNSFLKNCLEVQDKIKGIFNNAATESQTDTSPSDLFVKTENEDKEFDINEMEMSIKAESIDIKSEDEEGSDLLLQSSDSESFEKSVLRDAEEDECKHENRSTNQCNMKDKQDDKVFYKCDKCIYETGSESRFIAHRARHENDSEAYKCESCEYETENKKFFQKHRLRHKDSSDTRMHQCGSYDYKTRHRCELAKSQVKHKSASRGQLYECDICDFKTKRKVSFNSHYIKHKNSNNCVEYDYKTKYTALPNKDTSQLPIYKCNGCKYQSKNKRNFTRHQLIHKDPSQVQMYRCKDCDFETKYKGAMKKHQLKHKYPSQIQMYRCKDCDFETKYKDYIKRHQLQHGDAPQVQLCECKDCDYKTKYKADMKKHQLKHTDLSQVQKYRCNDCDFETKYKNVMKNHQLKHKDPSQVETYRCNDCDYKTIYKKYLKKHQLKHKDPSQVQMYKCSYCNYECKYNAIKLHELKHKDPSQVQMYRCKDCDYETKYRSYILRHQLKHKDPSQVQMYGCNDCDYQTKYKGDMKIHQLKHKDLSQVQKYRCNDCDFETKYKDIMKKHQLKHKDPLQVQTYRCNDCNYKTINKKYLKRHQLKHKDPSQVQMYRCNDCDFETKYKSCIKQHQLQHRDPSQVQMYRCNDCDFETKYKENIKRHQLTHREGVPTAIMNPNAGVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-