Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:13588-29809[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0017 0.052 13.8 4.3 1 23 285 307 285 307 0.98

2 14 0.013 0.4 11.0 8.1 1 23 316 338 316 338 0.98

3 14 0.33 10 6.6 3.5 1 23 347 369 347 369 0.97

4 14 0.00068 0.021 15.0 5.0 1 23 378 400 378 400 0.99

5 14 0.0016 0.051 13.8 1.7 1 23 409 431 409 431 0.98

6 14 0.0015 0.046 13.9 1.5 1 23 440 462 440 462 0.99

7 14 0.004 0.12 12.6 1.6 1 23 471 493 471 493 0.99

8 14 0.00092 0.028 14.6 1.9 1 23 502 524 502 524 0.99

9 14 1.8 56 4.2 3.2 1 23 533 555 533 555 0.97

10 14 0.00017 0.0051 16.9 1.7 1 23 564 586 564 586 0.98

11 14 0.079 2.4 8.5 2.7 1 23 595 617 595 617 0.98

12 14 0.00092 0.028 14.6 1.9 1 23 626 648 626 648 0.99

13 14 0.36 11 6.4 4.5 1 23 657 679 657 679 0.98

14 14 0.00043 0.013 15.6 1.0 1 23 688 710 688 710 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0017	0.052	13.8	4.3	1	23	285	307	285	307	0.98
2	14	0.013	0.4	11.0	8.1	1	23	316	338	316	338	0.98
3	14	0.33	10	6.6	3.5	1	23	347	369	347	369	0.97
4	14	0.00068	0.021	15.0	5.0	1	23	378	400	378	400	0.99
5	14	0.0016	0.051	13.8	1.7	1	23	409	431	409	431	0.98
6	14	0.0015	0.046	13.9	1.5	1	23	440	462	440	462	0.99
7	14	0.004	0.12	12.6	1.6	1	23	471	493	471	493	0.99
8	14	0.00092	0.028	14.6	1.9	1	23	502	524	502	524	0.99
9	14	1.8	56	4.2	3.2	1	23	533	555	533	555	0.97
10	14	0.00017	0.0051	16.9	1.7	1	23	564	586	564	586	0.98
11	14	0.079	2.4	8.5	2.7	1	23	595	617	595	617	0.98
12	14	0.00092	0.028	14.6	1.9	1	23	626	648	626	648	0.99
13	14	0.36	11	6.4	4.5	1	23	657	679	657	679	0.98
14	14	0.00043	0.013	15.6	1.0	1	23	688	710	688	710	0.98

Sequence Information

Coding Sequence: atgcaaCAAATAATCTTGGAAGAAACATTTTGTACGCTGTGTCTAAATACTGTAAGGGATTCAAATTGCCAGATAATGGATGTAATAAGGGATGttctaaaaattgttttgccGGATTTGAGCTTAGAAGAAACAGTTAAACATTTCATGTGTACAGTATGTTCGGGAAAATTGTTTGctgcttttaattttaaggCAATATGTACGGATACCGAGGATATTATTTTTCCTTACATTAATGCAAGTAGAACCTCAACGgttgatttaaaagaaatttatctGAAAGAAAATGGAAGCATTCAGTTAATCAATATATTGGAAGATCAGAGAATTTGTCGGTTATGTTTTCACTTAGTTGCAGACGAATTTGTGGCACTAAAAGAAGTGGATGTTGGCATAATCGATATGTATATACCACAAGTTAACATCAGTGCCACGAGAGATCCTGTTATATGTAAAGCCTGCTTTGATTCACTTCATACTCACAGCAGTTTTTTAAGGAACTGCCTCGATTCAcaggaaaaatataattatgttgATGAACAGTCTTACATTAAAACtgaagaaattgaaataaaactggAAGACAGTGGTCATGATGCACAGGAGAAATATAGATGTGATGAAAACCAGTCTAAAGAGATTGAAATAAAACCGAAAGATGATGAAGAAGGtgaTTCATCTCCAGACGACTTAGGAAATGAAACAATTGATTACAAAGAGATGCACCATTCTCAAGATATAGAACAAATAATAGGCGAATGTGAGATAGGATTAAAAGGACATCGTAATGTTCCAAGCAGAAGCAAGACCAGAAGCAAAAGGTCTAGATTTAAAATGTGTGAACGATTCTATCGATgtgataaatgtaaatataaatctaGGTTCAAAAATAGTCTGAAAAGGCATCAGTTAATACACAAAAACCCGTCAGAATTGACAATGCACAAGTGTGATAAGTGTGATCATAAAACTAAGTTTAAGACGAATCTAAAACAGCATCAGATAAGACACAAAATCTCTTCAGGATTCATGGTGTACAAGTGCAGTACATGCAGTTTTAAAACTAAGTATAAAAATGTCCTCGAAAAACACAAGTTGTTACATAACAACCCTtcagaaatccaaatgtacaaatgtgacaCATGCAGTTTTGAAACCAAACACAAGGGTAATCTAAAACGTCATCAGTTAAAGCACAAAGACCCTTCCGAAAcccaaatgtacaaatgtgacaGATGCAGTTATGAAACCAAACGCAACGATGAGCTAAAACTTCATCAGGTAAAGCACAAAGACCCTTCAGAtatccaaatgtacaaatgtgacaCATGCAGTTATCAAGCCAAACGCAAGGGTGATCTAAAACTTCATCAGTTAAGGCACAAAGACCCTtcagaaatccaaatgtacaaatgttaTACGTGCAGTTATGAAGCCAAACGCAAGGGTGATCTAAAACTTCATCAGTTAAGGCACAAAGACCCTTCcaaaatccaaatgtacaaatgtgacaCATGCAGTTTTGAAACTAAACGCAAGGGTGATCTAAAACTTCATCAGTTAAGGCACAAAGACCCTTCcgaaatccaaatgtacaaatgtgacaCATGCAGTTTTCAATCCAAACGCAAGGATGTTCTAAAATTTCATCAGTTAAGGCACAAAACTCcttcggaaatccatatgtatGAATGTGACACATGCAGTTATGAAACTAAACGCAAGAGTGATCTAAAACTTCATCAGTTAAGGCACAAAGACCCTTCcaaaatccaaatgtacaaatgtgacaCTTGCAGTTTTGAAACCAAACGCAAGGGTGATCTAAAATTTCATCAGTTAAGGCAcaaaaatccttcggaaatacaATTGTACAAATGTGACACTTGCAGTTTTGAAACCAAACGCAAGGGTGATCTAAAACTTCATCAGTTAAGGCACAAAGGCCCTTCcgaaatccaaatgtacaaatgtgacaCATGCAGTTTTGAATCCAAATGCAAAGGTGATCTAAAACGTCATCAGTTAAGGCACAAAAAGCcttcggaaatccatatgtacGAATGTGACACATGCAGTTTTGGAACCAAACGCAAGGATGATCTAAAAATTCATCAGTTAAGGCAcaaaaatccttcggaaatccatatgtttgaACAAATGTGA
Protein Sequence: MQQIILEETFCTLCLNTVRDSNCQIMDVIRDVLKIVLPDLSLEETVKHFMCTVCSGKLFAAFNFKAICTDTEDIIFPYINASRTSTVDLKEIYLKENGSIQLINILEDQRICRLCFHLVADEFVALKEVDVGIIDMYIPQVNISATRDPVICKACFDSLHTHSSFLRNCLDSQEKYNYVDEQSYIKTEEIEIKLEDSGHDAQEKYRCDENQSKEIEIKPKDDEEGDSSPDDLGNETIDYKEMHHSQDIEQIIGECEIGLKGHRNVPSRSKTRSKRSRFKMCERFYRCDKCKYKSRFKNSLKRHQLIHKNPSELTMHKCDKCDHKTKFKTNLKQHQIRHKISSGFMVYKCSTCSFKTKYKNVLEKHKLLHNNPSEIQMYKCDTCSFETKHKGNLKRHQLKHKDPSETQMYKCDRCSYETKRNDELKLHQVKHKDPSDIQMYKCDTCSYQAKRKGDLKLHQLRHKDPSEIQMYKCYTCSYEAKRKGDLKLHQLRHKDPSKIQMYKCDTCSFETKRKGDLKLHQLRHKDPSEIQMYKCDTCSFQSKRKDVLKFHQLRHKTPSEIHMYECDTCSYETKRKSDLKLHQLRHKDPSKIQMYKCDTCSFETKRKGDLKFHQLRHKNPSEIQLYKCDTCSFETKRKGDLKLHQLRHKGPSEIQMYKCDTCSFESKCKGDLKRHQLRHKKPSEIHMYECDTCSFGTKRKDDLKIHQLRHKNPSEIHMFEQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -