Agla013102.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:10816-15652[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.002 0.061 13.5 8.3 1 23 285 307 285 307 0.97 2 11 0.0017 0.052 13.7 3.5 1 23 316 338 316 338 0.98 3 11 0.00077 0.024 14.8 3.4 1 23 347 369 347 369 0.98 4 11 0.00082 0.025 14.7 1.7 1 23 378 400 378 400 0.99 5 11 0.0084 0.26 11.6 2.4 1 23 409 431 409 431 0.98 6 11 0.22 6.7 7.1 5.2 1 23 440 462 440 462 0.97 7 11 0.00064 0.02 15.1 4.5 1 23 471 493 471 493 0.98 8 11 7e-05 0.0022 18.1 4.3 1 23 499 521 499 521 0.98 9 11 0.0042 0.13 12.5 0.6 1 23 530 552 530 552 0.98 10 11 0.00011 0.0035 17.4 0.9 1 23 561 583 561 583 0.98 11 11 0.00061 0.019 15.1 6.9 1 23 592 614 592 614 0.98
Sequence Information
- Coding Sequence
- atgcaaccAGAAAAGTTGAAAGAAACATTTTGCAGGCTGTGTCTAAATACTATACGGGATATAAATTGCCAAGTAATAGAGGACGACATCATTGGCGTTCTAGAAAGTGTTTTGCTGAAACTGAACTTGGAGGAAAGATGTAGTCATTTCATGTGTAAGGAGTGTTCCGTAAAACTATTTGctgcttttaattttaagtcgACATTTATGAATACTGaggatattattttttcttatattaatgCCAGTGAAGCGTCAGTAATTGATTTAAAAGAAGTTTATCGCAaggaaaaaggaaatattaagTTAATCGATATGTCCGAAGATCAAAAAATTTGCCGATTATGTTTTCAGATGACAAACGGATTTGTACCACTAAATGAAGTGGAGATTGACATAATTCGAACACATATACCAAAAGTAaacATCAATGCTACTAGGGATCCTGTTATATGCGGGTCATGTTTTGATTCGCTTCATACTTATCgcggttttttaaaaaactgcctTGAGgcacatgaaaaatataaaaacgatAAACAGTCTTACATAAAAACTGAAGAGATTGAAATAAAACTGGAAGATGGTCAAGATGCTCAGGAGAAATATAATAACACTAataagcaattttattttaaatctgaaGATATAGAAGTAAAGGTAGAAGATAATCAGGAAGGtgATTTAAATTCCTGGGACTTAGGTgacgaaacaaatgaaaataaaaagatgTACGCTTCTCAAGAtatagaagaaataaaaaatgaatatatgcTTAAGTGCGAGACAGGGTTTGTTAATCATTTAAAAGGTCATCAATTAACACAGAAAGATCCTTTGAAAATCCAAATGCACAAGTGTGATGAATGTACTTACGAAACTAAACATAAGAGCCATTTGAAGAGACACCAGTTATTGCATAAAGACTCTTCAGAAATCCAAACATACAAGTGTGATATGtgtaattttgaaactaaatataaagaTGCCTTGAACAGGCATCATATAAAgcatagaaatatttcaaaaattcaaatgtaCACATGTGGTACATGCGGTTATGAAACTAAGCATAAGAGTTATCTGAAAAGTCATGAGCTAAAGCACAAAGACCCTTTGGATgtccaaatgtacaagtgtgatgaATGTAGTTATGAAACTAAACATAGGAGTCCCTGGACAAGACATATGTTAATACATAAAGATTCTtcagaaatccaaatgtacaaatgtgacaCTTGTgcttatgaaactaaatataagagtACTCTAAATGTACATCATTTAATACACAAAGACCCTTCTGAAATCCAAATGCACACATGTGATAAATgcaattttgaaactaaatataagcGTGCTCTGGACAGGCATCACATAATGCacagaaatatttcaaaaattcaaatatacaaGTGTGACACATGTAGTTATGAAACTAAGCAAAAGGGTAATCTGAAAAATCACTTAAAGCACCATTCGGAAATCCAAATGTTCAAGTGTGATGAATGTAGTTATGAAACTAAACAAAAGAGTCATTTGAAGAGGCATCAGTTACTGCACAAAAACTCTTCAGAAatccaaatatataaatgtgGTATGTGTAGTTTTGAATCTAAATATAAGGAAGCCCTGAGCAGGCATCAAATAGTGCATGGGAAAACTtcagaaatccaaatgtacatGTGTGATTCATGTGGTTATGAAACTAAACGTAAGGGTGATCTGAAAAGTCATCAGTTAAGGCATAGCGACCCTtcagaaatccaaatgtacaagtgtgatcaATGTAGTTATGAAACTAAACATAAGAGTCATTTGAAAAGACATCAGTTATTGCACAAAGATTCTGAAAATGCAAATATGCAAGTGTGA
- Protein Sequence
- MQPEKLKETFCRLCLNTIRDINCQVIEDDIIGVLESVLLKLNLEERCSHFMCKECSVKLFAAFNFKSTFMNTEDIIFSYINASEASVIDLKEVYRKEKGNIKLIDMSEDQKICRLCFQMTNGFVPLNEVEIDIIRTHIPKVNINATRDPVICGSCFDSLHTYRGFLKNCLEAHEKYKNDKQSYIKTEEIEIKLEDGQDAQEKYNNTNKQFYFKSEDIEVKVEDNQEGDLNSWDLGDETNENKKMYASQDIEEIKNEYMLKCETGFVNHLKGHQLTQKDPLKIQMHKCDECTYETKHKSHLKRHQLLHKDSSEIQTYKCDMCNFETKYKDALNRHHIKHRNISKIQMYTCGTCGYETKHKSYLKSHELKHKDPLDVQMYKCDECSYETKHRSPWTRHMLIHKDSSEIQMYKCDTCAYETKYKSTLNVHHLIHKDPSEIQMHTCDKCNFETKYKRALDRHHIMHRNISKIQIYKCDTCSYETKQKGNLKNHLKHHSEIQMFKCDECSYETKQKSHLKRHQLLHKNSSEIQIYKCGMCSFESKYKEALSRHQIVHGKTSEIQMYMCDSCGYETKRKGDLKSHQLRHSDPSEIQMYKCDQCSYETKHKSHLKRHQLLHKDSENANMQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -