Agla003856.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:92454-100535[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0087 0.27 11.5 2.8 1 23 219 241 219 241 0.98
2 16 0.025 0.78 10.0 1.8 1 23 250 272 250 272 0.98
3 16 1.4 44 4.5 5.2 1 23 281 303 281 303 0.96
4 16 0.005 0.15 12.3 5.6 1 20 312 331 312 333 0.95
5 16 8.2 2.5e+02 2.1 4.7 1 23 337 360 337 360 0.90
6 16 0.0017 0.052 13.7 0.9 1 23 367 389 367 389 0.97
7 16 0.5 15 6.0 7.3 1 23 433 455 433 455 0.98
8 16 0.012 0.38 11.0 1.1 1 23 464 486 464 486 0.97
9 16 0.01 0.31 11.3 3.0 1 23 495 517 495 517 0.99
10 16 0.00084 0.026 14.7 2.5 1 23 526 548 526 548 0.98
11 16 0.0021 0.063 13.5 2.4 1 23 557 579 557 579 0.98
12 16 0.00015 0.0045 17.1 2.1 1 23 588 610 588 610 0.99
13 16 0.00019 0.0057 16.8 1.8 1 23 619 641 619 641 0.98
14 16 0.0033 0.1 12.8 4.0 1 23 650 672 650 672 0.98
15 16 0.0043 0.13 12.5 1.2 1 23 681 703 681 703 0.98
16 16 0.0044 0.14 12.4 2.9 1 23 712 734 712 734 0.98

Sequence Information

Coding Sequence
ATGTTTTGTAGGCTTTGCCACAACATCATAACTGATGGGAATTTCAAAGTAATAGAAGAAACTATTAGAGAAGTTCTAGAGGTTCTTCTATTGAAACTGGATTTTGAAGATAATAAGCCTGTAATGTGCAATGCATGTTCCTCAAAACTTTTTGCAGCGTTCCATTTCAAGTCGAGGTGTATGGACACAGAGGATAGTATTTTTCCTTATGTTAATTCCGAAATTGTTGCGCCAATCGATTTAAAAGAGATTTATCTTAAAGAGAGACATAAAGAACATTTAAGAGGAATATTAGAAGATGAGAGAATTTGTCGGTTATGTATGCAGATAACCAGTTGTAATTTCACATCAGTAAAAGACGTGGGTACTGACATGATTCATAAATATATTCCGGAAGTGAATTTTAACTCGACCAAAGAACCAGTTATATGTGCAGTTTGTCTTGATTTGCTGAGAATCCACAGTAGTTTCTTAAGGGATTGTTCAGATACAGAGAAGGGCACTTATGACGACAGGCCGGTAGAAAATTCATTTCATATTATCACtgaaaaaattgaagtaaaatcTGAAGATGAAGATAATAATACTCTCTATGACGAAGAACTCGTTGACCAAGCAGCCAAGGAGGGTCCAAAATCGCAACactcaaaattatttgtatgcGATATATGCGGGTTTCAAACCAAATACAAATGCAATGTAAAAGTTCACCAGTTGAAACACCAAGATCTTTCTGAGGTGTCATCATATAAGTGTGATTTGTGCGATTTCGAAACAAAGTACAAAAAGAGCATAATAAGTCATCAATTAAAACACAAGGACTGTTcccagattcaaatgtacaagtgtgatgtGTGTGATTTTAAAACTAAGCACCAGGCAAGCCACCTACGCCATCAGACGTTACATAAGGATATTTCAGAGATTCAAATGTACACGTGTGATAAGTGTGATTATAAATCCAGTCAAAAGGGCCACCTCAGACGTCATAAGTGCTATATGCGAAAGTACATGTGTGATCACTGTGATTATGAAACCAAGGTCAAGAGGGAATTTATATTTCATCTACATAGAAGACACAATATCATTTCCGAAAAgtacaaatgtgataaatgtgATTACGAGACCGTGTATAAGGGTGCCTTGAAAATACATCAGTTCCAACATGAAAAACTTTCTGAGGCGGATTTGTACAGGGATACTCCTCCATGTGATGGTGAAAATGTCAATTGCAAAGCCAAGGAAGATCTAAAATCTCATCAGTCGAAGCAAGAGAATTTTTCAGACACACGAATATACAAGTGTTATAAGTGTACTTATAAAACCAGGATCAGAAGCCATTTTACATACCATCAACTGAGTCACAAAAAGCTCTCCGAAGTATTGGCTTACAAATGCGATATTTGTGGTTTTCAAACCAAGTACAAAGGAAATCTACCGTCTCACAAATTGAAACACAAAGATCTTTCTGCGGTGCAATCGTACAAATGTGATTTGTGCGATTTTGAAACCAAGTACAAAAAGAGCATGACGAGTCAtcaattaaaacacaaaaactGTTCTCAGactcaaatgtacaagtgtgatgtGTGCGAGTTTAAAACTAAGCACAAGGCAAGCCTGGTGCGCCATCAGATGTTGCACAGGGACAATTCAGAAGTTCAAATATACAAGTGTGATCAGTGTGATTATAAATCGAACCAGAAGGGCTACCTCACGATGCACAAGTTGAGACACAAAGATGTTGCCAATGCGCAAACATATACGTGTGATCAGTGTGACTATGAAACCAAATTCAAAAAGAACCTCACAGCTCATCTACAAAAGCACAAAGACATTTCGGAGGAACAAAGGTACAGATGCGATAAATGTGATTACGAAACAAAATATAGGAGCGCCTTAAAATCCCATCTGTTAAAACACAAAGACCTTTCCGAGACGGATTTGTACAAGTGCGATAAATGTGATTATGAAACTAAGTACAGGAGAGCCTTAATAAAGCATCATTTGAAACACAGAGACCGTTCCGAGACGCAAATGTACACATGCGATTTGTGTGATTACGAAACCAAATATAAGAGCAGCATAAAATCGCATCGACTGATACACGAAGACCTCTCTGCCGTGCAAACATACAAGTGTGATACGTGCGATTTTGAAACAAGGTATAAAAAGTCCCTAAAAAATCATGAACTAAAACACAAAGATATGAATATATAA
Protein Sequence
MFCRLCHNIITDGNFKVIEETIREVLEVLLLKLDFEDNKPVMCNACSSKLFAAFHFKSRCMDTEDSIFPYVNSEIVAPIDLKEIYLKERHKEHLRGILEDERICRLCMQITSCNFTSVKDVGTDMIHKYIPEVNFNSTKEPVICAVCLDLLRIHSSFLRDCSDTEKGTYDDRPVENSFHIITEKIEVKSEDEDNNTLYDEELVDQAAKEGPKSQHSKLFVCDICGFQTKYKCNVKVHQLKHQDLSEVSSYKCDLCDFETKYKKSIISHQLKHKDCSQIQMYKCDVCDFKTKHQASHLRHQTLHKDISEIQMYTCDKCDYKSSQKGHLRRHKCYMRKYMCDHCDYETKVKREFIFHLHRRHNIISEKYKCDKCDYETVYKGALKIHQFQHEKLSEADLYRDTPPCDGENVNCKAKEDLKSHQSKQENFSDTRIYKCYKCTYKTRIRSHFTYHQLSHKKLSEVLAYKCDICGFQTKYKGNLPSHKLKHKDLSAVQSYKCDLCDFETKYKKSMTSHQLKHKNCSQTQMYKCDVCEFKTKHKASLVRHQMLHRDNSEVQIYKCDQCDYKSNQKGYLTMHKLRHKDVANAQTYTCDQCDYETKFKKNLTAHLQKHKDISEEQRYRCDKCDYETKYRSALKSHLLKHKDLSETDLYKCDKCDYETKYRRALIKHHLKHRDRSETQMYTCDLCDYETKYKSSIKSHRLIHEDLSAVQTYKCDTCDFETRYKKSLKNHELKHKDMNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-