Agla006772.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:2196-54284[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0065 0.2 11.9 1.8 1 23 301 323 301 323 0.98 2 21 0.00048 0.015 15.5 3.2 1 23 332 354 332 354 0.99 3 21 0.00012 0.0037 17.3 4.0 1 23 363 385 363 385 0.98 4 21 0.00028 0.0087 16.2 3.3 1 23 394 416 394 416 0.98 5 21 0.00025 0.0076 16.4 2.5 1 23 425 447 425 447 0.98 6 21 0.0054 0.16 12.2 3.2 1 23 456 478 456 478 0.98 7 21 6.3 1.9e+02 2.5 4.1 1 23 487 509 487 509 0.97 8 21 0.0027 0.082 13.1 3.1 1 23 518 540 518 540 0.98 9 21 0.026 0.8 10.0 1.9 1 23 549 571 549 571 0.97 10 21 0.0029 0.09 13.0 0.9 3 23 582 602 580 602 0.97 11 21 0.048 1.5 9.2 4.9 1 23 963 985 963 985 0.98 12 21 0.018 0.55 10.5 5.4 1 23 994 1016 994 1016 0.98 13 21 2.5 77 3.8 3.2 1 23 1025 1047 1025 1047 0.98 14 21 0.022 0.66 10.3 3.7 1 23 1056 1078 1056 1078 0.98 15 21 0.11 3.5 8.0 0.9 1 23 1087 1109 1087 1109 0.96 16 21 0.0023 0.071 13.3 1.5 3 23 1120 1140 1118 1140 0.97 17 21 0.015 0.47 10.7 4.3 1 23 1149 1171 1149 1171 0.98 18 21 0.023 0.7 10.2 2.0 1 23 1180 1202 1180 1202 0.98 19 21 4e-05 0.0012 18.8 4.5 1 23 1211 1233 1211 1233 0.99 20 21 0.00099 0.03 14.5 2.2 1 23 1242 1264 1242 1264 0.98 21 21 4.4 1.4e+02 3.0 1.2 1 13 1273 1285 1273 1288 0.84
Sequence Information
- Coding Sequence
- ATGAGTGATGTTAAGGAAAGTTCGTGTAGGCTTTGCATTAAATCTATAATAGATACAAATTTTGAAGTGGTAGACAACGTTATCAGAGACATTTTGGATGTTCTTTTGCCGAAATTGaaatttgataaCGAGAACAAAGAGGTTATATGTAGCGTTTGCAGAAGAAAATTATATGCGGCATTAGAATTTAAGTCGGCTTGTCTGAAGACCGATTACACAATTATTCCATATTTGGATTGTGAGAAAATGTTACAGCTCGATATAAGAGATGTGTATACGAAGGAAAAGACAAGCGAGTCAATGGATATTTCAGAtagtcagaaaatatgtcgattgtgtatggAGCCAGTAGATAGTGAGTTTAGGTGTATACGTGAAGAGGAACTTGAAGCTATCGAGAAACTGGCTCCTGAACTGATTATAAACATCGTCAAAGATCCCGTTATATGTAAGGAATGCTTTGGTTCTGTGTGCACTCACAATAATTTCCTAAAAGATTGCTTAGAAgtggaagaaaaaattaaaagtatttttgataGTTCAGTCTCACGAAGTCAAATAGATACGTCTCCACTTGATTTACTCGTTAAGACTGAAAACTTGGACAAAGAATTCGATAGTAACAAAATAGAAATGTCAATTAAAGCTGAAAATATCGACATAAAATCGGAAGATGAGGAAAGGAGCGACACGCCACTGCAGTGCTCCGATAAGATGCCATTCGAGGAGAGTGTCTGTAAAAATGAAGAAGAGGTTGGATATAAACAGCAGAATGGATCAGAAATGAAAACCAAGCAGGAGCGCAAAGTATTatacaaatgtgataaatgcATTTACGAAACTGGAAGTGAGATCCCTTTTACCGCACACTTTGTGAGACACGAGAACGATTCGGAAGTGTATAAATGTGAATCGTGTGAgtataaaactgaaaatgaGAAATCACTTCAGAGGCACCTGTCGAGGCATAAAGATCCTTtgcagattcaaatgtacaagtgcaaagactgcgatttcgaaactaaatacaaaagtaatgtgaaaaatcaccaactcaaacataaagatccttcgcaggttcaaatgtatagGTGTAATGACTGCGGTTACAAAACTATAAACAAGAGTCATATCAAacggcaccaactgaaacataaagatccttcgcaggttcaaacgtataggtgtaatgactgcgattacgaaactataaACAAGAGTCATATCAAacggcaccaactgaagcataaagatccttcccAGGTGCAattgtacaggtgtaacgactgcgattacgaaactaaatacaaggatGATATGAAaaaacaccaactgaaacacaaagatccttcgcaggttcaaatctACAGGTGTACCGACTGCagttacgaaactaaatacagcagaaatataaaaagacaccaactgaagcataaagatgcttcccaggttcaaatgtacaggtgtaacgactgcagtTACGAAACTAAATGCAGCAAAGATATGAAAGGACACCAACtaaagcataaagatccttcgcaggttcaaacgtacaggtgtaatgactgcgatttcgaaactaaatacaaaaataatattaaaaagcaccaactgaaacataaaggtCCTTCGCAGCTTCAAATGTtcaagtgtaacgactgcgattttgaaactaaatacaagagtgtTATTAATAAGCATCAACTGCAGCATAGAGATCCTTCCCAGGTGCAATTGTAcgggtgtaacgactgcgattacgaaactaaatacaagggtGATATGAAaaaacaccaactgaaacacaaCGATCCTTCGCAGGtgcaaatGTTAGAAGTGACGATTGACGAGTTTGTATTCTTTTTATACTCAAAAGGAGATTGTCGTAGAGCAATGAGTGATGTTAAGGAAACTTCGTGTAGACTTTGCATTAAATCTATAATAGATACAAGTTTTGAAGTGGTAGACAACGTTATCAGAGACATTTTGGATGTTCTTTTGCCGAAATTGaaatttgataaCGAGAACAAAGAGGTTATATGTAGCGTTTGCAGAAGAAAATTATATGCGGCATTAGAATTTAAGTCGGCTTGTCTGAAGACCGATTACacaattatttcatatttgGATTGTGAGAAAATGTTACAGCTCGATATAAGAGATGTGTATACGAAGGAAAAGACAAGCGAGTCAATGGATATTTCAGAtagtcagaaaatatgtcgattgtgtatggAGCCAGTAGAAAGTGAGTTTAGGTGCATACGTGAAGAGGAACTTGAAGCTATCAAGAAACTGGCTCCTGAACTGATTATAAACATCATCAAAGATCCCGTTATATGTAAGGAATGCTTTGATTCTGTGTGCACTCACAATAATTTCCTAAAAGATTGCTTAGAGGcggaagaaaaaattaaaagtacttTTGATCATTCGGCCTCACGAAGTCAAATAGATACGTCTCCACTCGATTTATTTGTTAAGACTGGAAACTTGGACAAAGAATTCGATATTAACGAAATAGAAATGTCAATCAAAGCTAAAAATATCGACATAAAATCGGAAGATGAGGAAAGGAGCGTCACGCCGCTGCAGTGCTGCGATAAGGTACCATTCGAGGAGAGTGTCTGTAAAAATGAAGAAGAGGAAGGATATAAACAGCAGAATGGATCAGAAATGAAAATCAAGCAGGAGAGCAAAGtattgtacaaatgtgataaatgcATTTACGAAACTGGAAGTGAGATCCGTTTTATGGCACACTTTGTGACACACGAGAACGATTCGGAAGTGTATAAACGTGAATCGAGTGAGTATGAAACTGAAAATGAGAAATCACTTCAGAGGCACCTGGCGAGGCATAAAGACCCTTCaaaggttcaaatgtacaagtgtaacgactgcgattacgaaactaaatacaaggctTGCATCAAACGGCATAAACTGAAAcacaaagatccttcgcaggttcaaatgtacagatgtaaagactgcgattacgaaactaaatacaaggattgtatcaaaaagcaccaactgaaacataaagatccttcacaggttcaaatgtacaagtgtaatgcctgcaattacgaaactaaatacttCAAATATATGAAAGGACACCAACtaaagcataaagatccttcgcaggttcaaacgtacaggtgtaacgagtgcgatttcgaaactaaatacaagcaTGCTGtcaaacagcaccaactgaaacataaagatccttctcaggttcagatgtacaggtgtaatgactgcgatttcgaaactaaatacaagggtGTTATCAATCAGCATCAACTGCAGCATAGAGATCCTTCCCAGGTGCAATTGTAcgggtgtaacgactgcgattacaaaactaaatacaagggtGATATGAAaaaacaccaactgaaacacaaCGATCCTTCGCAGGtgcaaatgtacaggtgtaaaaactgcaattacgaaactaaatacaaggattacatcaaaaagcaccaactgaaacatgaAGATCCTTcccaggttcaaatgtacaggtgtaacgactgcagtTACGAAACTAGATACAGCAAAGATATGAAAGGACACCAACTAAAGCATAAAGACCCTtctcaggttcaaatgtacaggtgtaacgactgcgattacaaaactaaatacagcAGAAATTTGAAAAGACACCAAcagaagcataaagatccttcccAGGTGCAattgtacaggtgtaacgactgcgattacgaaactacaTACAAGTATGATATGAAACtacaccaactgaaacacaaagatccttcgcaggttcaaatgtacaagtgtaacgattgcgattttgaaactaaatacaaagaGTATATCGCATCGTACGGATCATTAAAATGA
- Protein Sequence
- MSDVKESSCRLCIKSIIDTNFEVVDNVIRDILDVLLPKLKFDNENKEVICSVCRRKLYAALEFKSACLKTDYTIIPYLDCEKMLQLDIRDVYTKEKTSESMDISDSQKICRLCMEPVDSEFRCIREEELEAIEKLAPELIINIVKDPVICKECFGSVCTHNNFLKDCLEVEEKIKSIFDSSVSRSQIDTSPLDLLVKTENLDKEFDSNKIEMSIKAENIDIKSEDEERSDTPLQCSDKMPFEESVCKNEEEVGYKQQNGSEMKTKQERKVLYKCDKCIYETGSEIPFTAHFVRHENDSEVYKCESCEYKTENEKSLQRHLSRHKDPLQIQMYKCKDCDFETKYKSNVKNHQLKHKDPSQVQMYRCNDCGYKTINKSHIKRHQLKHKDPSQVQTYRCNDCDYETINKSHIKRHQLKHKDPSQVQLYRCNDCDYETKYKDDMKKHQLKHKDPSQVQIYRCTDCSYETKYSRNIKRHQLKHKDASQVQMYRCNDCSYETKCSKDMKGHQLKHKDPSQVQTYRCNDCDFETKYKNNIKKHQLKHKGPSQLQMFKCNDCDFETKYKSVINKHQLQHRDPSQVQLYGCNDCDYETKYKGDMKKHQLKHNDPSQVQMLEVTIDEFVFFLYSKGDCRRAMSDVKETSCRLCIKSIIDTSFEVVDNVIRDILDVLLPKLKFDNENKEVICSVCRRKLYAALEFKSACLKTDYTIISYLDCEKMLQLDIRDVYTKEKTSESMDISDSQKICRLCMEPVESEFRCIREEELEAIKKLAPELIINIIKDPVICKECFDSVCTHNNFLKDCLEAEEKIKSTFDHSASRSQIDTSPLDLFVKTGNLDKEFDINEIEMSIKAKNIDIKSEDEERSVTPLQCCDKVPFEESVCKNEEEEGYKQQNGSEMKIKQESKVLYKCDKCIYETGSEIRFMAHFVTHENDSEVYKRESSEYETENEKSLQRHLARHKDPSKVQMYKCNDCDYETKYKACIKRHKLKHKDPSQVQMYRCKDCDYETKYKDCIKKHQLKHKDPSQVQMYKCNACNYETKYFKYMKGHQLKHKDPSQVQTYRCNECDFETKYKHAVKQHQLKHKDPSQVQMYRCNDCDFETKYKGVINQHQLQHRDPSQVQLYGCNDCDYKTKYKGDMKKHQLKHNDPSQVQMYRCKNCNYETKYKDYIKKHQLKHEDPSQVQMYRCNDCSYETRYSKDMKGHQLKHKDPSQVQMYRCNDCDYKTKYSRNLKRHQQKHKDPSQVQLYRCNDCDYETTYKYDMKLHQLKHKDPSQVQMYKCNDCDFETKYKEYIASYGSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -