Agla006591.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:72547-85894[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00094 0.029 14.5 2.6 1 23 540 563 540 563 0.95 2 11 0.00087 0.027 14.7 1.4 2 23 592 614 591 614 0.96 3 11 0.00016 0.005 16.9 0.9 1 21 620 640 620 641 0.95 4 11 0.2 6.3 7.2 1.8 1 23 675 697 675 697 0.98 5 11 0.00021 0.0065 16.6 2.8 3 23 739 760 738 760 0.97 6 11 0.00032 0.0097 16.0 4.2 1 23 766 789 766 789 0.96 7 11 0.001 0.032 14.4 0.7 1 23 795 817 795 817 0.95 8 11 0.00047 0.014 15.5 1.9 1 23 845 868 845 868 0.97 9 11 0.27 8.3 6.8 5.4 1 23 874 896 874 896 0.98 10 11 0.002 0.061 13.5 0.4 2 23 905 926 904 926 0.95 11 11 7.6e-06 0.00023 21.1 1.3 1 23 932 955 932 955 0.94
Sequence Information
- Coding Sequence
- atgagTTTACCTGGTAGAACTACACGTCAATGTTGTGCTCCAAATTGCAAAAGCACTTACTATGTCTGTATTGAATcctatagaaataaaagttttttcaaaattacaaaagacaGACAATTATCGTGGATAGAATCAGTTAGAAAATTATGCAAATCAGACTTTACTCTGACAGACGTagatcattatttttgtgaagaccattttgagttaaaatgttttaaaaacagtaatagGAATAGTCTCAACAGAAATGCTGTGCcgacattatttttaggatcaGCTACAAGTTCAGCTATTAATTGTGATAATATTACCTGGGAATCCTCGGATAGTGTCCAATATTCAACAAAACGATTTGTTAACGTAACATTACAGAATGTTCAGGGTACGAGCTGCCAAACTTCAATTTCAGATGATTGTTCACcaccttttaaaaaaccaaaatacaCATATTCAAAATTGTCGTTTCCTATAAGTGCTACTGCGAGTACCAGTGCCATTACTGAGAATACAGACAGCAAGTGCAATGAAGCCGAAGCGGAATCAAGTACTAGCCATaTCATCAAAATGACGTGCAGAACTTGTTTGAAAGTGATGGATCCGAATTCTGGTGTggatttaaggaaaaaattaagtttaggTAAAACCATCGAAGAAATAATACTTCTTTTTGTTCCAGAAATGGTAAAATCAAAATTGGTGGATAATGTTATATGTAGTCAATGCGTGAATACTGTCGAAGTCTTTGCAAAGTTTATAGAAAAGATAGTCAGtgttgaaaattatttgaaagcCACAAATTTTAGTCAGAAACAAATAGataAGTTAAACAGAACACTTGAAGAGCCTGGAGCAAGTACAACCAATAAAAGTTTAAACGAAGGAAAAACATTGCTATTAGAACAGGTGCAGCAGCCGCTTTTAAAACCAATAACTTTTACTAGACCGTTAAGAACATATCCCGGTAGAAATCAAATCCCTGTGTTGATACTCGCAGAAGAGCCGTCGAATGTTCTTAGTCCGACTATCGCTAATGTAGTACAGTGTAAAGAAAGCCCTGTTATTGTAAGTACTCAAAATCTTATAGAAGAAACTAAAAAATCTGCTGAAAACTGCAAGaaagtgATTGATTATGCAACCGAATTTCTAAAACCCATTTTTCATCATTCGAAGAGTGATAATGATGTCTCGGAGATAAGTAGTTCGCCCAAAGGCGAACCAGAGGCGACAAAAGCAAGTCCTGAGGATTTAAAAACCATTGATCGAGTTGCCGTTACAGAATTTTTGGAGACGAAAGAAGACGATTTGGCGTTACCGACGATAAATTTAGCCGCCGAAAATGGAGATTCGAGTCTGTCCGGTGACGAATTGCCAACAGAAAAACAGTGCCTGGACAACATATTCAACAACACCGACTTAATAAAACCGTTCGACCCATCCCCGTCGTCGACCGACGTCAACCTAGACCACAACCGAATAATCGCCATGACGAAAACAAACATGGAAACCTTGGATCTTCTAACAAAATTGTCGGAAAGCAACGTCACGTTAATAAAACAGAACTCGCTGAAAGAAACGGGGACGAAACGGATCCTCTTGCTAGGAGCGGTGATTTTCCACTGCCCGGAATGTAAGATCCCATTCACCAGCCACAAGACCCTGAAGATTCACTTGATGGCGAGGCATCCGAACGCCACGCCCCTCCCGAACGTAGAGAACAAATTCTGCGACGTCGTCACGTATTCCAGGTTCTCGGGGACGATGCGGAAGGTCTGTCCGGTGTGCGAGAGACGTTTCATGACGTGCAGAATGTTGGAGAACCACATACGTCAGGTCCACCAGGACTACTACCTCTATTCGTGCCAGGTGTGCGGGAAGGAGttcaaaaaaaagaataattatatCACGCACGTTAAGAATTACGAAACGTACCAGAGCTGCAAAGTGAGGAAGTGCTCGTTTTGTAAGGAACTAGTTACCAAGGAAGGATATAAGACCCACGTAGAGACCCACAGAACGTTCAGGTGCAACAAATGCCGAATGTTGTTTTTGTCCGCCAGAACTTTAAACAAGCATTACCTGGTTCACCAAAAACCCGTAGTCaggaaaaaatgtatgaaaaaagAACTCTGCATCATTTGCGGTAAAATGGTGATCGGTTCCAACATAAACTACCACATGAAAAACCATTCGGCGAACCGCGACCTGCTCTGCGACAAATGTCCAAAGTCCTTCAAAATGAACAACTGCCTGCAGAAACACATCAGGTTGGTGCACGAAAACCCTGAATACCACGAGTGCTCGCTTTGCAACAGGCGGACCAAAACCAAAAGCGCGTTGAAGTACCACATGAGATTAAAACATTCCGATGTGTACACGTTCCTGTGCAGCCTCTGCGGCAGCGGTTTTATTAGGGAGGATTACTACAAGAGGCACATGAACCAGCATCTGTTCGACAACCTGTCCGAGGGCCACAGGGCGGCCAGAAGGAGGAACATTTACGCCAAAAGGAAGGAAAACGACCCGTTATACACCTGTAAATACTGCAACAGGGAATACACCACCGTGTATAAACTGAGGATGCACCTCATAAGCAGCCACGTGAACGGCATGAGGTTCAAGTGCCGCTACTGCGACATGACGTGCAAATCGGTCGCGAACAGGTACAAGCACGAGAAGAGGCACGAGGATCCCGAGACATTCGCACTAACTTGCCAGATTTGTTGGAACAGGTTCAGGGATAAGGATCAGCTGGCGGTCCATTCGTTGAAACACGTGGCTTCGCAAAGGTACAAGTGCGAGGTATGCGACAAGGCGTTTGCTAGGAAATACCTGCTGAACCACCATGTGAGCGAGACGCATTTGACCAAGGAACAGCTCGAGGAACAGAAGATTATTTTGCTTCAGGACGGCTTGAAAGATTACAGGATTAAGAAAGATCGCACTCCAAAAGTCGAAGAAACTTaa
- Protein Sequence
- MSLPGRTTRQCCAPNCKSTYYVCIESYRNKSFFKITKDRQLSWIESVRKLCKSDFTLTDVDHYFCEDHFELKCFKNSNRNSLNRNAVPTLFLGSATSSAINCDNITWESSDSVQYSTKRFVNVTLQNVQGTSCQTSISDDCSPPFKKPKYTYSKLSFPISATASTSAITENTDSKCNEAEAESSTSHIIKMTCRTCLKVMDPNSGVDLRKKLSLGKTIEEIILLFVPEMVKSKLVDNVICSQCVNTVEVFAKFIEKIVSVENYLKATNFSQKQIDKLNRTLEEPGASTTNKSLNEGKTLLLEQVQQPLLKPITFTRPLRTYPGRNQIPVLILAEEPSNVLSPTIANVVQCKESPVIVSTQNLIEETKKSAENCKKVIDYATEFLKPIFHHSKSDNDVSEISSSPKGEPEATKASPEDLKTIDRVAVTEFLETKEDDLALPTINLAAENGDSSLSGDELPTEKQCLDNIFNNTDLIKPFDPSPSSTDVNLDHNRIIAMTKTNMETLDLLTKLSESNVTLIKQNSLKETGTKRILLLGAVIFHCPECKIPFTSHKTLKIHLMARHPNATPLPNVENKFCDVVTYSRFSGTMRKVCPVCERRFMTCRMLENHIRQVHQDYYLYSCQVCGKEFKKKNNYITHVKNYETYQSCKVRKCSFCKELVTKEGYKTHVETHRTFRCNKCRMLFLSARTLNKHYLVHQKPVVRKKCMKKELCIICGKMVIGSNINYHMKNHSANRDLLCDKCPKSFKMNNCLQKHIRLVHENPEYHECSLCNRRTKTKSALKYHMRLKHSDVYTFLCSLCGSGFIREDYYKRHMNQHLFDNLSEGHRAARRRNIYAKRKENDPLYTCKYCNREYTTVYKLRMHLISSHVNGMRFKCRYCDMTCKSVANRYKHEKRHEDPETFALTCQICWNRFRDKDQLAVHSLKHVASQRYKCEVCDKAFARKYLLNHHVSETHLTKEQLEEQKIILLQDGLKDYRIKKDRTPKVEET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -