Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:42836-47098[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.002 0.062 13.5 1.0 1 23 296 318 296 318 0.97

2 13 0.00019 0.0057 16.8 2.0 1 23 327 349 327 349 0.98

3 13 0.0095 0.29 11.4 1.8 1 23 358 380 358 380 0.97

4 13 0.022 0.69 10.2 2.7 1 23 389 411 389 411 0.99

5 13 0.035 1.1 9.6 5.6 1 23 420 442 420 442 0.98

6 13 0.00054 0.017 15.3 4.7 1 23 451 473 451 473 0.99

7 13 0.001 0.032 14.4 2.5 1 23 482 504 482 504 0.98

8 13 0.0021 0.064 13.5 4.0 1 23 513 535 513 535 0.99

9 13 0.0075 0.23 11.7 5.4 1 23 544 566 544 566 0.99

10 13 0.019 0.59 10.4 6.0 1 23 575 597 575 597 0.98

11 13 0.0017 0.053 13.7 2.4 1 23 606 628 606 628 0.98

12 13 0.0016 0.048 13.9 6.3 1 23 637 659 637 659 0.99

13 13 1.2e-05 0.00038 20.5 4.3 1 23 668 690 668 690 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.002	0.062	13.5	1.0	1	23	296	318	296	318	0.97
2	13	0.00019	0.0057	16.8	2.0	1	23	327	349	327	349	0.98
3	13	0.0095	0.29	11.4	1.8	1	23	358	380	358	380	0.97
4	13	0.022	0.69	10.2	2.7	1	23	389	411	389	411	0.99
5	13	0.035	1.1	9.6	5.6	1	23	420	442	420	442	0.98
6	13	0.00054	0.017	15.3	4.7	1	23	451	473	451	473	0.99
7	13	0.001	0.032	14.4	2.5	1	23	482	504	482	504	0.98
8	13	0.0021	0.064	13.5	4.0	1	23	513	535	513	535	0.99
9	13	0.0075	0.23	11.7	5.4	1	23	544	566	544	566	0.99
10	13	0.019	0.59	10.4	6.0	1	23	575	597	575	597	0.98
11	13	0.0017	0.053	13.7	2.4	1	23	606	628	606	628	0.98
12	13	0.0016	0.048	13.9	6.3	1	23	637	659	637	659	0.99
13	13	1.2e-05	0.00038	20.5	4.3	1	23	668	690	668	690	0.99

Sequence Information

Coding Sequence: ATGGCTGGTGTTCAAGAAACTTCGTGTAGGCTTTGCCTTAAAACTGTAATCGATAAAGGCTTTGCCCTAATAGACGACGCTATTAGAGATATTCTAGATGTTCTTTTGCTTAGAGTGATATTTGATGGTGAAGGCAAGGAGGTTATATGTCATGTTTGCAGAAGAAAATTATATGAGGCCTTAGAATTTAAGTCAACTTGTCTGAATACAGATCACGTTATTATTCCATATGTggattgtgaaaaaatgttacagctcgATATAAAAGAAGTGTACACGAAGGAAATGGGAAGTGAGTCGGTGGATATTTCTGATAGTCAGAgaatatgtcgattgtgtatgcaCTTAGTGAAACGTGAATTTATCTGCATAGGTGAAGAAGAACTTGAAGCTATTGAGAAATTGGCTCCTCAAATGATTATAAACATCATCAAAGATCCCGTTATATGCAGGCCGTGTTTTGATTCCTTGTGTATGCACAACAGTTTCTTAAAAGAGTGTTTAGATgtagagaaaaaagttaaaggcaTTTTTGATAGTCCAACCACAGAGATTCCAATAGATACGTCACCATCTGACAAAGAGTTCGATATTAAGGATATGGAAATGTCAATAAAAACTGAATGTATCAACATAAAATCAGAAGATGAGGAAATGAGcGACACTCCACTGCAGACCTCCAATAATGAGCCATCTGCGAAGAGTGATTGTAAAGATGCAGAAAAGTATGGGTGTAAACATGAGAATGGATCAGAAAACAAATGTAATACGCAAGCCAAACAGGAGCACAACGTGTTGCATAGATGTGATAAAAGTATTTACGAAACTGGAAGTGATATCCGTCCTATGGCACATTGTGGGAGACACAAGAAAGATTCAGAAGTGTACAAGTGCGAAACGTGCGAGtttgaaactgaaaataaaaaactgctTCAACGGCACCAATTGGGACATAAAGATTCTTCGCcggttcaaatgtacagatgtaacgactgcgattacgaaactaaatacaagagttacATCAAACGGCACCAATTGGTACATAAAGATTCTTCTCcggttcaaatgtacagatgtaacgactgtgattacaaaactaaatacaagaatgcCATTACCATGCACCaagtgaaacataaagatccatcacaggttcaaatgtacaagtgtaacaacTGTAGTTATGAAAGTAAATACAAGAACTCTGTCAAAtggcaccaactgaaacataaagatccttcgcaggtccAAACATAcaagtgtaatgactgcgatttcCAGACCAAATACAAGCATTATATCACacaacaccaactgaaacataaagatccttcacatgtgcaaatgtacaagtgtaacgactgtgattttgaaacaaaatataggagctatttcaaaaagcaccaactgaaacataaagattctTCACAGGtgcaaatgtacaggtgtaacgactgcgatttcaaaactagatACAGCAAGAATATGGAAGaacaccaactgaagcataaagatccttcacaggttcaaatgtacaagtgtaatgactgcgatttcaaaactagatACAAGAATTCTATCAAACGGCACCAGCTGAAACATAAATGTCCTTCTGGGGTCCAAATGTATAAGTGTAAGGATTGCGATTACGAAACTGTCCACAAGAATCATATCAAACAGCACctactgaaacataaagatccttcacgggttcaaatgtacaggtgtactGATTGCagttacgaaactaaatacagaaAACATATCAAacgacaccaactgaaacataaagattctTCACAGGtgcaaatgtacaggtgtaacgactgtgaTTTCAAGACTAGATACAGCGAGAGCATGAAAGaacaccaactgaagcataaagatccttcacaagtTCAAATGTATAAGTGTAACGATTGCAATTACAAAACTAGATACAAGAGTCATATtaaacagcaccaactgaaacataaagatccttcgcaagTCCAAACATACAGGTGTAAagactgcgattacaaaactaaatacaaggatAATCTGAAaaaacaccaactgaaacacaaaCATTCTCCCCAGGTTTag
Protein Sequence: MAGVQETSCRLCLKTVIDKGFALIDDAIRDILDVLLLRVIFDGEGKEVICHVCRRKLYEALEFKSTCLNTDHVIIPYVDCEKMLQLDIKEVYTKEMGSESVDISDSQRICRLCMHLVKREFICIGEEELEAIEKLAPQMIINIIKDPVICRPCFDSLCMHNSFLKECLDVEKKVKGIFDSPTTEIPIDTSPSDKEFDIKDMEMSIKTECINIKSEDEEMSDTPLQTSNNEPSAKSDCKDAEKYGCKHENGSENKCNTQAKQEHNVLHRCDKSIYETGSDIRPMAHCGRHKKDSEVYKCETCEFETENKKLLQRHQLGHKDSSPVQMYRCNDCDYETKYKSYIKRHQLVHKDSSPVQMYRCNDCDYKTKYKNAITMHQVKHKDPSQVQMYKCNNCSYESKYKNSVKWHQLKHKDPSQVQTYKCNDCDFQTKYKHYITQHQLKHKDPSHVQMYKCNDCDFETKYRSYFKKHQLKHKDSSQVQMYRCNDCDFKTRYSKNMEEHQLKHKDPSQVQMYKCNDCDFKTRYKNSIKRHQLKHKCPSGVQMYKCKDCDYETVHKNHIKQHLLKHKDPSRVQMYRCTDCSYETKYRKHIKRHQLKHKDSSQVQMYRCNDCDFKTRYSESMKEHQLKHKDPSQVQMYKCNDCNYKTRYKSHIKQHQLKHKDPSQVQTYRCKDCDYKTKYKDNLKKHQLKHKHSPQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -