Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:86-4097[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0033 0.1 12.8 5.1 1 23 327 349 327 349 0.98

2 13 0.07 2.1 8.7 2.9 1 23 361 383 361 383 0.98

3 13 0.00035 0.011 15.9 2.9 1 23 392 414 392 414 0.99

4 13 0.0004 0.012 15.7 1.5 1 23 423 445 423 445 0.99

5 13 0.00039 0.012 15.7 1.4 2 23 455 476 454 476 0.97

6 13 0.002 0.062 13.5 5.8 1 23 485 507 485 507 0.98

7 13 0.0044 0.14 12.4 4.4 2 23 517 538 516 538 0.97

8 13 0.0063 0.19 11.9 1.5 1 23 547 569 547 569 0.98

9 13 0.00071 0.022 14.9 0.8 1 23 578 600 578 600 0.99

10 13 0.01 0.31 11.3 2.4 1 23 609 631 609 631 0.98

11 13 0.00066 0.02 15.0 2.7 1 23 640 662 640 662 0.99

12 13 0.028 0.86 9.9 2.6 1 23 671 693 671 693 0.98

13 13 0.0018 0.055 13.7 4.4 1 23 702 724 702 724 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0033	0.1	12.8	5.1	1	23	327	349	327	349	0.98
2	13	0.07	2.1	8.7	2.9	1	23	361	383	361	383	0.98
3	13	0.00035	0.011	15.9	2.9	1	23	392	414	392	414	0.99
4	13	0.0004	0.012	15.7	1.5	1	23	423	445	423	445	0.99
5	13	0.00039	0.012	15.7	1.4	2	23	455	476	454	476	0.97
6	13	0.002	0.062	13.5	5.8	1	23	485	507	485	507	0.98
7	13	0.0044	0.14	12.4	4.4	2	23	517	538	516	538	0.97
8	13	0.0063	0.19	11.9	1.5	1	23	547	569	547	569	0.98
9	13	0.00071	0.022	14.9	0.8	1	23	578	600	578	600	0.99
10	13	0.01	0.31	11.3	2.4	1	23	609	631	609	631	0.98
11	13	0.00066	0.02	15.0	2.7	1	23	640	662	640	662	0.99
12	13	0.028	0.86	9.9	2.6	1	23	671	693	671	693	0.98
13	13	0.0018	0.055	13.7	4.4	1	23	702	724	702	724	0.99

Sequence Information

Coding Sequence: ATGCAACCAGGAAACTCCAAAGAAATATTATGCAGACTGTGTCTTAATATTATTACCGAAAGAAGCTGCGAAATAATAGGAGAAGGCGTAAGGAAGGTTTTGAAAGTACTTATGCCGAGTGTGaatcTGGAGGAGAGAGATAATCATGCAATATGTAAAGCATGCAGTGTAAAATTATTGGCggcctttaattttaaatcaacatGTATGGATACGGAGGGCATTATTGTTCCTTATGTTATCTCCACCAAATATTCAACGGTTGACTTAAAAGAAGTTTATCTAAAGGAGAAAGGAAACATTCACTTAATCGATATATCAGAAAATCATAGGATTTGTCGATTATGTATTCAGTTGGTGACATATGGATTTGTGTCACTAAATGAAGTGGATGTTGACATAATCAACGCATGTATACCAGAAGttAACGTCACAGCTACTATGGATCCCATTATATGTAATCCGTGTTTTGATTCACTGCGTACTCATGGCGGGTTTTTAAAGAATTGCCTTGATGCAcaggaaaattataaaaatgcagATGAGCAGTCTTGTATTAAAACTGAAGAAATTGAAGTAAAACTGGAAGACGGTCACGGTATACAGGAGAAACATAAAAATGTCGagcaattttatgttaaaactgaaaagattgaaataaaattggaaGTAGATAGTCAGGGTCCGCAAGAGAACTATAAATGTGTTGAAAACCAGTGTTACATTAAATGTGAAGATGTTGCAATAAAATTAGAGGCTCAAGATTGtgattcaTTTGACTTATATGATGAATCGGTTGAGAGCGAAAAGAAGTGCACCTCAGAAGATTTAGGAGAAACAAAGACTAAATGTGTGCTTAAATATGAGACAGGATTAAATGAAAACTGTACAGCATCGATGTTTGGTTACAACATCGAAGTATCCAAAAATGAAAAGTCTAGATTCCAAAAATGTGACCCTTTATTAGAGAAGCGATTCCATCAATgtgataaatgtaaatataaaactaaaCTTAAAGCTAATCTAAAAAGGCATCGGTTAATGCACGAAAATCCTTCAGTACAAACCGAGGTACAAACTTACAGGTGTGATAGGTGCAACTATGAAACTAAACTGAAGTATCGTTTAAAAATGCATCAGTTATCACACATGGACCCTtcagaaatccaaatgtacaagtgtgatactTGCGATTTTGAAACCAAATATAAGGCTCATCTAAAAGTGCATCAGATAACGCACAAAGAACCTTcggaaatccaaatgtacaagtgtgatacaTGTAGTTATGAAGCTAAATATAAGAGTAATTTAAACAGTCATCAGCTGATGCATAAAGATCCTACGGAAATACAAATGTGGAAGTGCGATACTTGTGGTTTTGAAACTAAACTCAAGAGTCAGTTGAAAAGACATCAGTTATCACACAAAGACCCTTcggaaatccaaatgtacaagtgtgatacaTGTAGTTATGAAGCTAAACATAAAAGTCATCTGAAAAGGCACCAGTTATTGCACAAAGACCCTTCGGAAATACAGATGTGGAAATGTGATACGTGtaatttcgaaactaaatacaagagtcaATTGAAAAGACATCACTTATCACATGAAAACCCTtcagaaatccaaatgtacaaatgcGACTCTTGTACCTATGAAACTAAGTATAAGTACGCTTTAGACAGACATCAGATAAtgcacaaaaatatttcaaaaattcaaatgtacaaatgtgatactTGTGTCTATGCAACTAAATATAAGAGTGGTCTAAAAGTGCATCAACTAATGCACAAAGACACTTCGAAGATTGGAAAGTTCAAGTGTGACTCGTGTAGCTATGAAACTAAGTATAGAAACAATTTGAGATCACATCAATTGTTGCACAAAGATTCTTCAGAAATtgaaatgtacaaatgtgatatgTGCGATTATAAAgctaagtataaaaaatatctaaaagatCATCAGTTAACGCATAAAGGCCCTTCGGAAAtcaaaatgtacaaatgtgatacaTGTACTTTTGAAACTAAGTTCAGAAGGAGCTTAAAATTGCATCAATTAATACACAAAGATTCTTCAGAAATtgaaatgtacaaatgtgattcTTGTACTTATGTAACAAAACATAAGACTTATCTGAGGGTGCATCAATTAACACACAAGGATTCCTTAGAAGTCCAAACACAAGTTTGA
Protein Sequence: MQPGNSKEILCRLCLNIITERSCEIIGEGVRKVLKVLMPSVNLEERDNHAICKACSVKLLAAFNFKSTCMDTEGIIVPYVISTKYSTVDLKEVYLKEKGNIHLIDISENHRICRLCIQLVTYGFVSLNEVDVDIINACIPEVNVTATMDPIICNPCFDSLRTHGGFLKNCLDAQENYKNADEQSCIKTEEIEVKLEDGHGIQEKHKNVEQFYVKTEKIEIKLEVDSQGPQENYKCVENQCYIKCEDVAIKLEAQDCDSFDLYDESVESEKKCTSEDLGETKTKCVLKYETGLNENCTASMFGYNIEVSKNEKSRFQKCDPLLEKRFHQCDKCKYKTKLKANLKRHRLMHENPSVQTEVQTYRCDRCNYETKLKYRLKMHQLSHMDPSEIQMYKCDTCDFETKYKAHLKVHQITHKEPSEIQMYKCDTCSYEAKYKSNLNSHQLMHKDPTEIQMWKCDTCGFETKLKSQLKRHQLSHKDPSEIQMYKCDTCSYEAKHKSHLKRHQLLHKDPSEIQMWKCDTCNFETKYKSQLKRHHLSHENPSEIQMYKCDSCTYETKYKYALDRHQIMHKNISKIQMYKCDTCVYATKYKSGLKVHQLMHKDTSKIGKFKCDSCSYETKYRNNLRSHQLLHKDSSEIEMYKCDMCDYKAKYKKYLKDHQLTHKGPSEIKMYKCDTCTFETKFRRSLKLHQLIHKDSSEIEMYKCDSCTYVTKHKTYLRVHQLTHKDSLEVQTQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -