Agla005692.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:83497-92651[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.012 0.36 11.1 3.0 1 23 287 309 287 309 0.98
2 18 0.00017 0.0052 16.9 3.3 1 23 318 340 318 340 0.99
3 18 0.04 1.2 9.4 5.0 1 23 349 371 349 371 0.98
4 18 0.15 4.6 7.6 5.3 3 23 380 402 378 402 0.92
5 18 0.18 5.4 7.4 4.8 1 23 411 433 411 433 0.97
6 18 8.3e-05 0.0025 17.9 2.8 1 23 442 464 442 464 0.99
7 18 0.18 5.5 7.4 1.3 1 23 473 495 473 495 0.97
8 18 0.00095 0.029 14.5 3.9 1 23 504 526 504 526 0.98
9 18 0.0067 0.21 11.9 5.5 1 23 535 557 535 557 0.98
10 18 0.023 0.72 10.2 1.9 1 19 566 584 566 588 0.92
11 18 0.011 0.35 11.1 2.8 1 23 597 619 597 619 0.98
12 18 0.00024 0.0074 16.4 2.8 1 23 628 650 628 650 0.99
13 18 0.057 1.7 8.9 2.0 1 23 659 681 659 681 0.98
14 18 0.00011 0.0033 17.5 2.7 1 23 690 712 690 712 0.98
15 18 0.79 24 5.3 7.5 1 23 721 743 721 743 0.98
16 18 0.00063 0.019 15.1 2.7 1 23 752 774 752 774 0.99
17 18 0.12 3.6 7.9 0.8 1 23 783 805 783 805 0.97
18 18 0.00047 0.014 15.5 2.9 1 23 814 836 814 836 0.99

Sequence Information

Coding Sequence
ATGACCGGTGTTCAAGATACTTCGTGTAAGCTGTGCCTCAAAACTGTAACCGTTAAAGGTTTTGAGGTAATAGACAACGTtattagagatattttagatggccttttgctgaaattgAAATTTGATATCGAAGGCAAGGAGGTTATATGTAACGATTGCAGAAGAAAGTTAGACGCAGCAGTAGAATTTAAGTCAACTTGTCTGAAGACCAATTACGCAATTATTCCATATGTGGATTGTGAAAAAACGTTACAGCTCGATATAAGAGACGTGTATACAAAGCAAAGGACAAGCGAGTCAATGGATATTGCAGATGGCCAGAAAATATGTCAATTGTGTATGCATCCAGTAGAAAATGAGTTTAAGTGTGTACGTGAAGTGGAACTTGAAGCTATCGAGAAGTTGGCTCCTGAATTGATTATAAACATCATCAAAGATCCTGTTGTATGTAAGGAATGCCTTGATTCTCTGTGCACTCACAACAGTTTCCTGAAAGATTGCTTAGAGGtggaagaaaaaactaaaagtaTTTTTGATAGTTCAGCCCCAGAGAGTCAGATAGATACGTCACCATCTGATTTATTGGTTAAGACTGAAAGCCAGGACAAAGAAATCGACATCAACGAGATGGAAATGTCTATCAAAGCTGAAAGTATCGACATAAAATCGGAAAATGAGGAAGGGAGcGACTCGCTACTGCAGAGCTCCGATAGTAAATCATTCGAGAAGACCGTCCTTAGAGATGCAGAAGAGGATGGATGTAAACATGAGAATACATCGGCAAACGAATGTAACACGAAAGTCAAAGTATTTTACAAATGTGATAAACGTATTTACGATCCTTTGCAGGTTCAAACGTACAGATGTAATGAGTGTGATTACAAAACTATATACAAGAGATATATtaaacagcatcaactgaaacataaagatccttcgcaggttcaaatgtacaagtgtaacgactgcgattacaaaactaaatacaagggtGATATGAAAaaacaccaactgaagcataaagatttTTCACAGGTTCAAAAGTACAGGTGCAATGACTgtgatttcgaaactaaatacaagcaTGTCATGAAgaaacaccaactgaaacacaaaaacccttcgcaggttcaaacgtGCAGGTTTAAggactgcgattacaaaactataAACAAGAAATGTCTCAAAAAGCATCagctgaagcataaagatccttctcaggttcaaatgtacaagtgtagcTACTGTAATTATGAATGTAAATACAACAATTCTATCAAACTGCatgaactgaaacataaagatcgtacacaggttcaaatgtacaagtgtaacgactgcgattacgaaactaaatacaagggtaatatgaaaaaacaccaactgaaacataaagatcctccACAGGTTCAAAAGTACATGTGTCTGgactgcgatttcgaaactaaatacaagaaataCATCATTCAACACCAACTGCAGCATAGAGATCCTTCTCAGGtcaaaatgtacaggtgtaacgactgccaTTACAAAACTAATTCCAAGGATAATATGGAACTtcaccaactgaaacacaaagatccttcgcaggttcaaacgtacaggtgtaatgactgtgaTTACAAAACTATATACAAGAAATATTTCGAACaccaccaactgaaacataaagatccatcGCAGGTCcagatgtacaggtgtaacgactgcgattacgaaactaaatacaaaaatgaaatgaaaaaacacCCGCTGAAACACAGAGATCCTTTGCAGGTTAAAACGTACACGTGTAATGAGTGTGATTACAAAACTATATACAAGAGATATATtaaacagcatcaactgaaacataaagatccttcgcaggttccaatgtacaagtgtaacgactgcgattacaaaactaaatacaagggtGATATGAAAAaccatcaactgaaacataaagatctttCACAGGTTCAAAAGTACAGGTGCAATGACTgtgatttcgaaactaaatacaagaatgtCATTAAGAACcaccaactgaaacacaaaGACCCTTCGCAGGCTCAaacgtacaggtgtaacgactgcgattacaaaactataAACAAGAAATATCTCAATAAGCATCAGCTGAAtcataaagatccttctcaggtgcaaatgtacaagtgtagcTACTGTAATTATGAATGTAAATACAACCACTATATCAAACTGCatgaactgaaacataaagatccctcccaggttcaaatgtacaagtgtaacgactgcgattacgaaactaaatacaaaaataatattaaaaaccaccaactgaaacataaagatctttCAGAGGTTCAAAGGTACAgttgtaatgactgcgatttcgaaactaaatacggGAGTTACATCGTAAAGCATCAACTGCAGCATAGAGATCCTTCTCAGGTTCAaacgtacaggtgtaatgactgcgatttcgaaactaaatataagagtTATATCAAACGGCATCAACTGACACATAGAGAAGGTGTACCGACTGCGATTAGGAATCCAAATGCAGGAGTGgtataa
Protein Sequence
MTGVQDTSCKLCLKTVTVKGFEVIDNVIRDILDGLLLKLKFDIEGKEVICNDCRRKLDAAVEFKSTCLKTNYAIIPYVDCEKTLQLDIRDVYTKQRTSESMDIADGQKICQLCMHPVENEFKCVREVELEAIEKLAPELIINIIKDPVVCKECLDSLCTHNSFLKDCLEVEEKTKSIFDSSAPESQIDTSPSDLLVKTESQDKEIDINEMEMSIKAESIDIKSENEEGSDSLLQSSDSKSFEKTVLRDAEEDGCKHENTSANECNTKVKVFYKCDKRIYDPLQVQTYRCNECDYKTIYKRYIKQHQLKHKDPSQVQMYKCNDCDYKTKYKGDMKKHQLKHKDFSQVQKYRCNDCDFETKYKHVMKKHQLKHKNPSQVQTCRFKDCDYKTINKKCLKKHQLKHKDPSQVQMYKCSYCNYECKYNNSIKLHELKHKDRTQVQMYKCNDCDYETKYKGNMKKHQLKHKDPPQVQKYMCLDCDFETKYKKYIIQHQLQHRDPSQVKMYRCNDCHYKTNSKDNMELHQLKHKDPSQVQTYRCNDCDYKTIYKKYFEHHQLKHKDPSQVQMYRCNDCDYETKYKNEMKKHPLKHRDPLQVKTYTCNECDYKTIYKRYIKQHQLKHKDPSQVPMYKCNDCDYKTKYKGDMKNHQLKHKDLSQVQKYRCNDCDFETKYKNVIKNHQLKHKDPSQAQTYRCNDCDYKTINKKYLNKHQLNHKDPSQVQMYKCSYCNYECKYNHYIKLHELKHKDPSQVQMYKCNDCDYETKYKNNIKNHQLKHKDLSEVQRYSCNDCDFETKYGSYIVKHQLQHRDPSQVQTYRCNDCDFETKYKSYIKRHQLTHREGVPTAIRNPNAGVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-