Agla013461.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:40150-43170[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00028 0.0086 16.2 2.1 1 23 276 298 276 298 0.99 2 14 0.0066 0.2 11.9 9.0 1 23 310 332 310 332 0.98 3 14 0.00019 0.0057 16.8 2.4 1 23 341 363 341 363 0.99 4 14 0.002 0.061 13.5 4.7 1 23 372 394 372 394 0.98 5 14 0.015 0.45 10.8 1.5 1 23 403 425 403 425 0.98 6 14 0.0014 0.044 14.0 3.7 1 23 434 456 434 456 0.98 7 14 0.0011 0.034 14.3 5.5 1 23 465 487 465 487 0.98 8 14 0.0031 0.096 12.9 2.6 1 23 496 518 496 518 0.98 9 14 0.1 3.2 8.1 4.2 1 23 527 549 527 549 0.98 10 14 0.00096 0.029 14.5 2.1 1 23 558 580 558 580 0.98 11 14 0.0021 0.063 13.5 2.3 1 23 589 611 589 611 0.98 12 14 0.00076 0.023 14.8 4.6 1 23 620 642 620 642 0.98 13 14 0.00032 0.0097 16.0 1.7 1 23 651 673 651 673 0.98 14 14 0.018 0.57 10.5 7.9 1 23 682 704 682 704 0.98
Sequence Information
- Coding Sequence
- atggaaGGTAGGAAAGCAATATTTTGCAGACTTTGCATAAATATTGTGAGCAATGGAAATTTTACAGTAATAGACGAATCTACGAGGGaaattataaaaacagtttCACTGAATCTGgACTTAGGCAACTATAAACATATCATGTGTTCTACCTGTTCCATTAAACTGTATTCTGCGTTTGACTTTAAATCCACTTGTCTCTATGTTGAGGATAAGATTGTTTCTTATGTTAATCCAAAAATTTCCTTCGTCGACTTAAGAGAAGTTTATTTAAAGGAACAAAAGAGCAAACCGTTCATTAAAATGGAAGATGAccagaaaatatgtcgattatGTTTGCAGTCCGTTAGTGAGGGATTTGTGTCATTTCATGAAGAGAAGTTAGAGATGATTATTAGATACATCCCAGAAGTGAATTTTGGCTTCACCGAAGATCCTGTCATTTGTAATCAATGTTTTAATTCGCTAAAAGTGCACGATAGTTTCATAAAGACCTGTTCAgatgttgaaaaacaaattcagaacaTAGGTGACAACAAAATCATAGATTTAGGGGCGTGTGATGCCTTTATTAAACGAGAAGAGAATGAAATTGAATTTGGAGATGAACAGATGGAGGGGTTAGTTAAAACTGAAAAAGAGTTGGAAACAGATGAAATGCTGTTAGAAACGGAAGAAATTGACATAAAATTTGAGGGAGAGGAATGGGAAAGtgattcttCATCCAACATCATAAACAAATATGATGCTCCATCCATGGTACCATCACATAATAATAACGGTTACAAAAATGAGTTTAACAGAGACCCTTCAGATATCAAAATGTACAAGTGCGATTATTGTACATATAAAGCTAAATATAAGGGTGGTTTAAGGAGACATCAGTTGACGCacaaaaatatttcagcaaTTCAAGCAATCCAAATGTTCAAGTGTGATACATGCACTTATAAAAGTAAGCATAAAAGTCATCTAAATAAGCATAAGTTAACACACAAAGATGCTTCAgaaattcaaatgtacaagtgtgatactTGTTCTTATGAGACTAAATATAAGGGTGATTTAAAAAAGCATCAATTAACACACAAAGACCcttcagaaattaaaatgtaccAATGTGATGCATGCAATCATAAAACTAAACATAAGAGTGATCTAAAAGTGCATCAGTTAATGCACAAAGACCCTTCGGAAATggaaatgtacaaatgtgatactTGTACTTATGAAACTAATCAAAAGGGTCGCCTAAGAATGCATCAGTTATTGCACAAAGACCCTTCGGAAATCAGAATGTACAAATGTGACACTTGTActtatgaaactaaatttaGCAGTCATCTGAATGTGCATCAGCTATCTCACAAAGATTCTTCAAATAccaaaatgtacaagtgtgaatCTTGTACTTACGAGACTAAGTATAAAAGTCATTTGAAAAGGCATCAGTTATCGCACAAAGATCCTTCGGATATTCAAATGTATGAGTGTTTCACTTGTTcttataaaactaaatttaagagTGATTTAAAAGTGCATCAGTCGATTCACAAAAACGTTTCtgaaatccaaatgtacaaatgtgactCTTGTGCCTATAAAACTAAGTATAACAGACATCTAAAACTGCATCAGTTATTGCACAAAGACCCTTCGGAAATggaaatgtacaaatgtgatgcTTGTACTTATGAAACTAAAAATAGGAGTCATCTGAAAGCGCATCAGTTATGGCACAAAGACCCTTTGGAAATTGAAATGTACAAATGCGATACGTGTACTTACGAGACTATAAACAGGAGTCATCTGAAAGGGCATCTATTATCACACAAAGACCCCATAAAAACCAAAATATACAAATGTGAATTGTGTACTTATGAAAGTAAGTATAAGAGTCATTTGAAAAGGCATCAATTATTGCACAAAGACCCTTcggaaatccaaatgtacaagtgtgatactTGTACgtatgaaactaaatataacaGTGATCTAAAAGTGCATCAGTTATCGCACAAAGATCCTTTAGATATCCAAATGTATAAATGTGATAATTGTACTTACGAAACTAAACATAAAAAGAGCCTCAAACACCATCTATCTAGACATAGGAACCCTTCCACAGCGAGTAGGAATAAGATACTTGTGACTAAATGCAGTAAATAA
- Protein Sequence
- MEGRKAIFCRLCINIVSNGNFTVIDESTREIIKTVSLNLDLGNYKHIMCSTCSIKLYSAFDFKSTCLYVEDKIVSYVNPKISFVDLREVYLKEQKSKPFIKMEDDQKICRLCLQSVSEGFVSFHEEKLEMIIRYIPEVNFGFTEDPVICNQCFNSLKVHDSFIKTCSDVEKQIQNIGDNKIIDLGACDAFIKREENEIEFGDEQMEGLVKTEKELETDEMLLETEEIDIKFEGEEWESDSSSNIINKYDAPSMVPSHNNNGYKNEFNRDPSDIKMYKCDYCTYKAKYKGGLRRHQLTHKNISAIQAIQMFKCDTCTYKSKHKSHLNKHKLTHKDASEIQMYKCDTCSYETKYKGDLKKHQLTHKDPSEIKMYQCDACNHKTKHKSDLKVHQLMHKDPSEMEMYKCDTCTYETNQKGRLRMHQLLHKDPSEIRMYKCDTCTYETKFSSHLNVHQLSHKDSSNTKMYKCESCTYETKYKSHLKRHQLSHKDPSDIQMYECFTCSYKTKFKSDLKVHQSIHKNVSEIQMYKCDSCAYKTKYNRHLKLHQLLHKDPSEMEMYKCDACTYETKNRSHLKAHQLWHKDPLEIEMYKCDTCTYETINRSHLKGHLLSHKDPIKTKIYKCELCTYESKYKSHLKRHQLLHKDPSEIQMYKCDTCTYETKYNSDLKVHQLSHKDPLDIQMYKCDNCTYETKHKKSLKHHLSRHRNPSTASRNKILVTKCSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -