Agla002051.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:575311-585520[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00054 0.017 15.3 0.3 1 23 198 220 198 220 0.98 2 13 0.06 1.8 8.9 0.5 2 20 223 241 222 244 0.93 3 13 0.00029 0.009 16.1 0.3 3 23 252 273 251 273 0.97 4 13 0.17 5.3 7.4 1.6 1 23 362 384 362 384 0.98 5 13 3.1e-05 0.00096 19.2 0.4 3 23 388 408 386 408 0.94 6 13 0.023 0.69 10.2 0.1 3 23 416 437 415 437 0.92 7 13 0.0013 0.04 14.1 3.7 1 23 443 466 443 466 0.94 8 13 3 93 3.5 2.1 2 23 473 495 472 495 0.91 9 13 0.0051 0.16 12.2 0.4 1 23 501 523 501 523 0.94 10 13 0.6 18 5.7 0.2 3 23 553 573 551 573 0.95 11 13 0.00017 0.0053 16.9 2.2 1 23 579 601 579 601 0.98 12 13 0.0044 0.13 12.4 0.2 1 23 609 631 609 631 0.97 13 13 5.9e-05 0.0018 18.3 2.3 1 23 637 660 637 660 0.95
Sequence Information
- Coding Sequence
- ATGGAACTGATAAAGTGCAGAACATGTTTAAGACTTTCTGATAAAAATGATTGTGTGGACATTGAAAGCAGATGTTATTTGGAACAATCTATCAAGCAAGCTATATTGCGTCTAGTGCCTGAAATGGTTTTAAcgattgatgatgatgatgtggTGTGTAGAAAGTGTTTGAGgacattaaaaatatgtgtgaaatttattaaaacatgtttaacTGTCGAGATGATTCTTGCTCATAACAAAAAGCCTTTCGACATTCCGCTAGAAGGATTGGATATGGAAGAAGTTAAAATCGAAATTGAAGAAATAGAGGATATGCTTGAACAAATTGATTCCGATCATAATTATTACATGAAACAAGAAATTGCTGATTctgttgatgatgatgatgaaaatgaaaaGGATATAAATAATGAGAATGAATCTAGTAATAGTATTGCCTCATCTTTACAAGTCCTATTTGGACAACCATCGTTACTACTTAAAAGTAATTCTGTAGAGAATATTATATTGGAAATATCTGGTTCTCCCGAAGCTTCAGAAACTGATGCTGTAAAAGTCGAAATCAATGATGGTAGAAAAGAGGCTAACTTTGAATGCTCCATTTGCCCTTTAAAGTTCAACAGTGATGAGGAATACGAACTGCACTTGAAAACCCATATTCTGCCGTGCCCTTTTTGTGCTCAAACTTTTTCCACGGAAACGGAATATCATAACCATATTCCCCAACACAAAGAGAGCATGATCAAAATCTGCGAACTTTGCGGGAAGACATTAAAGGGGGCCAGATCGCTTAAAACGCACATGATCACGATGCATGGGTTACCATCTCTGCAAATTTGCGATAGATCTATATCAGTTAACCATCACGGcagtgaaattgaaaataattctaatcTAGATCTTTTAATAAGCAGGCAAGAGATGTACGAAACTAGCAATAGTTTTTCCATGTCTTTGCAAGAACACTCATTATTACAAGATAATTCAACAGAGGATATTATATTGGAAATATCTGACTCTCCTGAGGCTTCTGGTGCTGTAAACACTGAAATTGATGACACTCCGGGAGATAAGTGTGTCTTTGTGTGTTCCATTTGCTGTCTAAAATTTCGCGACGGTGAGAAATACGAGCTGCACATGGAAACGCACACCTTGGCGTGCCCGTTCTGTGGTAAAACTTTTCGCACCAAAGCTGAATACAACGACCATACATCCGAACACGAAGAGAGCCTCATGAAAATCTGCGAATTTTGTGGCAAGGCTTTAAAGGGGGCCAGATCGCTGAAAATGCACATCACCGCATTGCACGAATTACCGTCTCGGCATATTTGCGACAAATGTCCGAAGTCGTTCAAGCACAAGTACAAGGTTAACCTGCACGTGAAGGAAGTCCACGAAAAGGCCAGACAACAGCAGTGTTCGGCGTGCGGGAAGCTTTTCGTGAATTCCGAGAGGTGTAAGAGTCATTATAAattagtTCATTTAAAGTTAAAACCATACATATGTTCTATATGTGGAAATAAATATGGCCGTAAAGATTATTTAGACAAGCATAAGGCTGATCATTGCGGTTTAAAGAAAAATGGCCAGCCAAAATCAACAAAACTACCCAAACACGGGATTCGTCTGAAAAATCCAGGTAAGCCCGTTATTTGCAGAGTATGTAACAGGGAAATAGGCTCGGTGCACCTTCTAAAGGCACACCTGGAGAGCCACGTAAAAATAAAGCGGTACAAATGCAAATATTGCGACTTAACGTTTAGCGTACCCAACAACAAAAAGCGACACGAAAAGTTACACGAAAGCGATTCCGAAAATAAATTCAGgTGTAACATTTGTTGGAAGAGGATGAAAACGGGGGAGGAGTTGGAGCAACACATAAACGGCCACGACAGACCGCCCCAATATTCGTGCGACGAGTGCGGCGAGAAATTTCACAGGAGGTACCTGCTTAAAAATCACATCTCGGAAAAACACACTTCCACGGAGGACATTGAAAAGGCCATAGAGGAGATCGTCGTGAAGAACCTTTTAGAGTACGCAgatccaaaaaccaaaaagtaa
- Protein Sequence
- MELIKCRTCLRLSDKNDCVDIESRCYLEQSIKQAILRLVPEMVLTIDDDDVVCRKCLRTLKICVKFIKTCLTVEMILAHNKKPFDIPLEGLDMEEVKIEIEEIEDMLEQIDSDHNYYMKQEIADSVDDDDENEKDINNENESSNSIASSLQVLFGQPSLLLKSNSVENIILEISGSPEASETDAVKVEINDGRKEANFECSICPLKFNSDEEYELHLKTHILPCPFCAQTFSTETEYHNHIPQHKESMIKICELCGKTLKGARSLKTHMITMHGLPSLQICDRSISVNHHGSEIENNSNLDLLISRQEMYETSNSFSMSLQEHSLLQDNSTEDIILEISDSPEASGAVNTEIDDTPGDKCVFVCSICCLKFRDGEKYELHMETHTLACPFCGKTFRTKAEYNDHTSEHEESLMKICEFCGKALKGARSLKMHITALHELPSRHICDKCPKSFKHKYKVNLHVKEVHEKARQQQCSACGKLFVNSERCKSHYKLVHLKLKPYICSICGNKYGRKDYLDKHKADHCGLKKNGQPKSTKLPKHGIRLKNPGKPVICRVCNREIGSVHLLKAHLESHVKIKRYKCKYCDLTFSVPNNKKRHEKLHESDSENKFRCNICWKRMKTGEELEQHINGHDRPPQYSCDECGEKFHRRYLLKNHISEKHTSTEDIEKAIEEIVVKNLLEYADPKTKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -