Agla013064.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:126025-131614[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0093 0.29 11.4 1.6 1 23 241 263 241 263 0.99
2 16 0.002 0.061 13.5 4.2 1 23 272 294 272 294 0.98
3 16 0.0056 0.17 12.1 3.5 1 23 303 326 303 326 0.98
4 16 0.0058 0.18 12.1 6.5 1 23 330 352 330 352 0.98
5 16 0.063 1.9 8.8 5.1 1 23 361 383 361 383 0.98
6 16 5.8e-05 0.0018 18.4 1.4 1 23 392 414 392 414 0.99
7 16 0.00014 0.0042 17.2 2.3 1 23 423 445 423 445 0.98
8 16 0.00027 0.0082 16.3 2.8 1 23 454 476 454 476 0.98
9 16 0.0044 0.14 12.4 1.3 1 23 485 507 485 507 0.99
10 16 1.3 41 4.6 4.7 1 23 516 538 516 538 0.97
11 16 0.0035 0.11 12.7 2.9 1 23 547 569 547 569 0.98
12 16 0.0021 0.064 13.5 6.7 1 23 578 600 578 600 0.97
13 16 0.012 0.35 11.1 3.5 1 23 609 631 609 631 0.98
14 16 0.00011 0.0035 17.4 5.2 1 23 640 662 640 662 0.98
15 16 0.016 0.49 10.7 4.2 1 23 671 693 671 693 0.99
16 16 0.02 0.61 10.4 5.7 1 23 702 724 702 724 0.97

Sequence Information

Coding Sequence
atgggaaaATCGGAGAATGCATTCTGCAGGCTTTGCCTGAAGGTCATAAACAACAAGAATTTCAAAGTAATAGAAGAAACTATTAGAGAAGTTCTAGACGTTTTGCATTTAAAGCTGgatgaggaagaaaataatacaaatgtGATATGCAACGCTTGTTCCATTAAACTGTTTGCTGCCTTTCAATTCAAGGTAATATGTATGGACACCGAAGACAGTATTTTTCCTTACATTAATTCTGAAAATGTGGAAACTGTGGATTTAAAAAAGCTTTATCTGAAGGAGAAACATAAAGAACATTTAAGTACCATATTGGAAGATGAGAAAATTTGCCGATTATGTATGCGGGTTAGCATCTCTGGATTTTCATCTGTAAATAACGTAGAGACTGATTTGATCCGTAAATGCATTCCAGAAGTTaattttagTTGCACTGAAGAACCAGTTATATGTTCATGTTGTCTTGATTCGTTGAACACTcatggtaattttttaaagaagtgtTTAGGGGCGCaggatgaaattaaaaatatttgtgtcaCTGAAGGTACAGGGAGTGAGTTCTGTGTCGGTGCtgaagaaattgaaataaaatctgAAGAAAACGATGAAGATAGCGATACCCCTTCCTTTAACGAAGAAACCAACGAAGGCGAAACCAAGGACAACTGTGGTCTAAACCCTCAACTGTCATATCCGAAACCTTCCATTGCAGAAATATACAAATGTGAATTGTGCGATTATCAAGCGAAACGCAGATACTATATTGTCCGTCATCagctaaaacataaaaaactttatgaaGTACAAACTTACAACTGTAACGTATGCGACTACAAAACCAAATTTAAGCATAATCTCGTGTCGCACCAGTTAAAGCACGAAGACCCTTTGAAATTACGAGTGTACGAGTGCGATAAATGCGATTTCAAATCTAAAAAAAGGGGTTTTCTAAATACACACCAACGAAAATACCACAAAGAGCTTCACAAGTGCGATAAGTGCAGTTATAGCACCATCAACAAACAGCACTTCACGCGACATCAGCTGGTACATAAAGATTTGTCTGAAGTGCGCTTATACGAGTGTGATACATGCACTTTCAAAACCAAGCACAAATACAGCTTTTCCGTCCATCAACTGAGTCATAAAGATGTTTCCGAGGTGCCGACATACAAATGCGATCAGTGTGATTACGTGACGAAGCAGAAGGTCCTCCTCAGAAGCCACCAGTTGAGACACAAAGATGTATCCGAGCTGGAACTTTACGAATGCGATGTTTGCGGCTACAAGTGCAAAGCAAAAGGCACTCTCAAAAGGCACCAGCTGAGGCACAAAGACATTTCCAAACTGCCGACATTTAAGTGTTACACTTGCGACTATCAGACTATTAACAAGAGTCACTTGATACGTCATATAACAGTACATAGGGACCCGTCGCATGTGCAAAAGTACAAGTGCGATTCTTGCAATTTCGAGGCGAAGTACAAGGATGGTCTTATGCGCCACCAGATGAAACACAAAGACCGTTCAGAGCTTGAATTGTTCAAGTGTGATATTTGTAGTTATGAAACCCTGCACAAGAGCTGTCTTAAGCTGCATCTAGAAAACCACAAGGacattttcgaaatgcctgtATACAAATGTGATGAGTGCGGTTTCACAACTAAGTACAAGAACAACCTAACATTCCATCAGTTGCGGCACAGAAACTTTTCAAACGAGCAAATGCACAAATGTACTATTTGTGATTTTACCACTACGCATAAGAATTACCTTAAGCGCCATCTGCTTCAGCACGAGAACCTTTCCATAGCGCAACTGTACACGTGTGATTCTTGTGACTTTAAGACAAGGTTTAAGAACAACCTCAGATATCACCAGTTGAGCCACAAAAAATTTTCGGAAGTCCAAACGTACAGGTGTGACCAGTGCGATTTTAAAACGAAGCATAAAAACAACCTGAAACGCCATATGGTAACACACAAAGACCTCTCGGATACGGAATTATACAAGTGTCATACTTGTGGTTACAAAGCGAAGCTCAAATCGAGTATGTCACAACACCAGCTGAAACACAAGGATCTTTCCAGTGTGCAAATGTTCAAATGTAAATTGTGCAAATTCAAAAGCAAGCACCAGAGCAGCCTTGTACGCCACAAACTACTGCACAAAAGCCGTTCCAAAAGAGCTTAG
Protein Sequence
MGKSENAFCRLCLKVINNKNFKVIEETIREVLDVLHLKLDEEENNTNVICNACSIKLFAAFQFKVICMDTEDSIFPYINSENVETVDLKKLYLKEKHKEHLSTILEDEKICRLCMRVSISGFSSVNNVETDLIRKCIPEVNFSCTEEPVICSCCLDSLNTHGNFLKKCLGAQDEIKNICVTEGTGSEFCVGAEEIEIKSEENDEDSDTPSFNEETNEGETKDNCGLNPQLSYPKPSIAEIYKCELCDYQAKRRYYIVRHQLKHKKLYEVQTYNCNVCDYKTKFKHNLVSHQLKHEDPLKLRVYECDKCDFKSKKRGFLNTHQRKYHKELHKCDKCSYSTINKQHFTRHQLVHKDLSEVRLYECDTCTFKTKHKYSFSVHQLSHKDVSEVPTYKCDQCDYVTKQKVLLRSHQLRHKDVSELELYECDVCGYKCKAKGTLKRHQLRHKDISKLPTFKCYTCDYQTINKSHLIRHITVHRDPSHVQKYKCDSCNFEAKYKDGLMRHQMKHKDRSELELFKCDICSYETLHKSCLKLHLENHKDIFEMPVYKCDECGFTTKYKNNLTFHQLRHRNFSNEQMHKCTICDFTTTHKNYLKRHLLQHENLSIAQLYTCDSCDFKTRFKNNLRYHQLSHKKFSEVQTYRCDQCDFKTKHKNNLKRHMVTHKDLSDTELYKCHTCGYKAKLKSSMSQHQLKHKDLSSVQMFKCKLCKFKSKHQSSLVRHKLLHKSRSKRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-