Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:21362-24673[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00023 0.0072 16.4 0.7 1 23 275 297 275 297 0.98

2 13 0.0055 0.17 12.1 2.8 1 23 306 328 306 328 0.98

3 13 0.005 0.15 12.3 1.7 1 23 337 359 337 359 0.99

4 13 0.031 0.95 9.8 7.6 1 23 368 391 368 391 0.98

5 13 0.45 14 6.1 0.9 1 23 398 420 398 420 0.96

6 13 0.0003 0.0091 16.1 0.7 1 23 429 451 429 451 0.98

7 13 0.00072 0.022 14.9 4.1 1 23 460 482 460 482 0.99

8 13 0.00086 0.026 14.7 1.8 1 23 491 513 491 513 0.98

9 13 0.00021 0.0064 16.6 0.4 1 23 522 544 522 544 0.98

10 13 0.00096 0.029 14.5 2.1 1 23 553 575 553 575 0.99

11 13 0.00021 0.0065 16.6 1.7 1 23 584 606 584 606 0.99

12 13 0.00058 0.018 15.2 5.1 1 23 615 637 615 637 0.98

13 13 0.0013 0.04 14.1 0.3 3 23 648 668 646 668 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00023	0.0072	16.4	0.7	1	23	275	297	275	297	0.98
2	13	0.0055	0.17	12.1	2.8	1	23	306	328	306	328	0.98
3	13	0.005	0.15	12.3	1.7	1	23	337	359	337	359	0.99
4	13	0.031	0.95	9.8	7.6	1	23	368	391	368	391	0.98
5	13	0.45	14	6.1	0.9	1	23	398	420	398	420	0.96
6	13	0.0003	0.0091	16.1	0.7	1	23	429	451	429	451	0.98
7	13	0.00072	0.022	14.9	4.1	1	23	460	482	460	482	0.99
8	13	0.00086	0.026	14.7	1.8	1	23	491	513	491	513	0.98
9	13	0.00021	0.0064	16.6	0.4	1	23	522	544	522	544	0.98
10	13	0.00096	0.029	14.5	2.1	1	23	553	575	553	575	0.99
11	13	0.00021	0.0065	16.6	1.7	1	23	584	606	584	606	0.99
12	13	0.00058	0.018	15.2	5.1	1	23	615	637	615	637	0.98
13	13	0.0013	0.04	14.1	0.3	3	23	648	668	646	668	0.97

Sequence Information

Coding Sequence: ATGGAAAAACTCGAAAAACCTTTCTGTTGGCTTTGCCTCAAAGTCATAAGTGAAGAAAATTTCCGAGTAATAGATGAAACTATTAGAGAAGTTCTAAATGTTCTCCTGTTGAAACTAGTAGGAAAAAACAGTATTGAAGGAAACGCCATGCCTGTGGTGTGCGATTCCTGTTCCGTGAAGCTGTTAGCAGCTTACGAGTTCAAGGTAATCTGTATGGGCACCGAGGACATTATCGTTCCTTATGTTAATTCTGAAAATGGAGTACCGGTCGATTTAAGGAAGGTTTATTTAAAGGAAGAAGGTAAAGAACATTTACAAACCATATTGGAGGATAGGAAAATTTGCCGGTTGTGTATGCAGAGCGTCGCCCACGGATTCACTTCGTTAAAAGATGCACAGACTGATATGATCCAAAAATATATTCCAGAAGTCAATTTCAGTTCCACGAAAGAACCAGTTATTTGTTCCATCTGTCTCGATTCGCTGAACACCCACGGCACCTTCTTAAAGAACTGCTTAGATCTACAGGAGAATATTAAATATACTCGTGACGAAAAAACCATGATGAATCCCTTCTCTATTAAGACTGAACAGAtcgaaataaaatttgaagaaaGCCACGAGAATAGtggGGCTGCTCTCTGTAACGACGACCAATTCGTTGACTGCAAAATCAAGAGCGAGATGGGTCTAAAGTCCCCAAAACCAAAACATGAGGACGTTGGTGAAGATCCTTTAGATGTACCAATGTATAGCTATTACGATCACGAAACCGCATGTATGGAGCATCATCCGATAGACAAAGACGTCTCGGAAGTGCAGTACCCGTGCGACAGATGTGACTATAAAACTAACCGCAAGGGTACCCTCCTACGTCACCAGCTGATACATAAAGACACTTCCGAACTGGATTTGTACGAGTGTGACGCGTGCGATTACAAAACCAAACTGAAGTACAATCTCATACGCCATCACCTAAAGCACAAAAACACCTCTGAGGTACCGGTGTACAAGTGTGATCAATGTGACTACGAATGTACAATAAGCAGTGATATAGcgaagcaccaactgaaacacagAGATCCCTCAGAAAAGAGAATATACAAATGTAAATTGTGTGACTTTACAACCAAGCACCACAACAGCCTTTCACGCCACAAACTAACACAACACGTTTCCCAAGTGCCAATGTACATGTGTGACGAGTGCGAGTTCGAAACGAAGTACAAAGAAAGCCTTGTGTTCCATCAGTTGAGACATAAGGATATTTCCGACACACAGTTCTACATGTGTGATAAGTGTGATTATAAATCCAAGGTAAAGGGCGACCTTGCGAGGCACCAATTGAGACACAAGGATAGATCGGAAAAGCAACAGTACAAATGCGCTTCATGCGATTTCGTAACAACGCACCGCAGCAGTCTCAAGCGCCACAAATTAACCCACAAAGACATTTCAGAAGTGCTAATGTACACGTGTGACATCTGCAATTTCCAAACTAAGTATAAAGAAAACCTTTCGATCCATCGGATGAGGCACAAAGACATTCCCAGTGCGCGGTTGTACAATTGTGACGAGTGTGACTACGGAACGAAAATAAAGAGCGATCTTACGAAGCACCAACTGGTACACAGAGATCTCTCAGAAGAGCAAATATACAAATGTACATCGTGCGAGTTCGCCACCAGGCACAACGGCAGCCTCGCTCGTCACCAACTGACACACAAAGACATTTCCCAAGTGCCGACGTACCAGTGTGACGTGTgtgattataaaacaaaagcgaAGAGTTACCTCACGACCCACCAGTTGAGACACAAAGACCTATCCGAAATGAAATTGTACAACTGTTGCGGGTGTGATTACGTAACCAAGCATAAGTCCGACCTTAAAAAGCACGAACTGACACACAAATGTGGTTCTGAAGTGCCGTTGTATTGGTGTGCTGTGTGTGACTACAGCACCAAGCAGAAGAGCAATCTGGTGCCGCATATGAAAAGGCACAAAAATCTGTCTGGGGGGGAATGA
Protein Sequence: MEKLEKPFCWLCLKVISEENFRVIDETIREVLNVLLLKLVGKNSIEGNAMPVVCDSCSVKLLAAYEFKVICMGTEDIIVPYVNSENGVPVDLRKVYLKEEGKEHLQTILEDRKICRLCMQSVAHGFTSLKDAQTDMIQKYIPEVNFSSTKEPVICSICLDSLNTHGTFLKNCLDLQENIKYTRDEKTMMNPFSIKTEQIEIKFEESHENSGAALCNDDQFVDCKIKSEMGLKSPKPKHEDVGEDPLDVPMYSYYDHETACMEHHPIDKDVSEVQYPCDRCDYKTNRKGTLLRHQLIHKDTSELDLYECDACDYKTKLKYNLIRHHLKHKNTSEVPVYKCDQCDYECTISSDIAKHQLKHRDPSEKRIYKCKLCDFTTKHHNSLSRHKLTQHVSQVPMYMCDECEFETKYKESLVFHQLRHKDISDTQFYMCDKCDYKSKVKGDLARHQLRHKDRSEKQQYKCASCDFVTTHRSSLKRHKLTHKDISEVLMYTCDICNFQTKYKENLSIHRMRHKDIPSARLYNCDECDYGTKIKSDLTKHQLVHRDLSEEQIYKCTSCEFATRHNGSLARHQLTHKDISQVPTYQCDVCDYKTKAKSYLTTHQLRHKDLSEMKLYNCCGCDYVTKHKSDLKKHELTHKCGSEVPLYWCAVCDYSTKQKSNLVPHMKRHKNLSGGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -