Agla006741.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:595-7262[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00028 0.0085 16.2 2.2 1 23 329 351 329 351 0.98
2 16 0.00028 0.0087 16.2 2.7 1 23 360 382 360 382 0.98
3 16 0.00036 0.011 15.9 4.4 1 23 391 413 391 413 0.98
4 16 0.0028 0.086 13.1 6.5 1 23 422 444 422 444 0.98
5 16 0.00098 0.03 14.5 6.3 1 23 453 475 453 475 0.98
6 16 0.0077 0.23 11.7 2.9 1 23 484 506 484 506 0.98
7 16 0.036 1.1 9.6 4.6 1 23 515 537 515 537 0.98
8 16 3.1e-06 9.5e-05 22.4 4.0 1 23 546 568 546 568 0.99
9 16 0.0011 0.034 14.3 4.6 1 23 577 599 577 599 0.98
10 16 9e-05 0.0028 17.8 6.2 1 23 608 630 608 630 0.99
11 16 0.0027 0.082 13.1 3.4 1 23 639 661 639 661 0.98
12 16 0.0053 0.16 12.2 2.1 1 23 670 692 670 692 0.99
13 16 0.0025 0.076 13.2 5.8 1 23 701 723 701 723 0.98
14 16 0.0045 0.14 12.4 2.5 1 23 732 754 732 754 0.98
15 16 0.00094 0.029 14.5 2.1 3 23 765 785 763 785 0.97
16 16 0.017 0.54 10.6 2.2 1 23 794 816 794 816 0.98

Sequence Information

Coding Sequence
ATGGCGGATCTTAAGGAAACGTCGTGTAGGCTTTGCTTTAAACCTGTAACCGATGAAAGTTTCGAAGTGATAAACAACATTATCAGGGACATTctagatgttcttttgctgaaattgaaatttgatagcgagagcaaagaggttatatgtaacgtttgcaGAAGAAAGTTAAATGCGGCGTTAGAATTTAAGTCGACGTGTTTGAATACCGATAAGACAATTATTCCTTATGTGGATAGCGAACAAATGTTACAGCCCGACTTAAGAGAAGTGTATGTACaggaaaagaaaattgaattgGTTCGcagtcagaaaatatgtcgattgtgtatgcaGCCAGTAGAAAGTGAATTTAGGTGCATACGTGAAGAGGAACTtgaagctattaaaaaattgataccTGAAATGaatataaatatcatcaaagGTCCCGTTGTATGTAAGCCATGCTGGGATTCTCTATGTACTCACAACAGTTTCCTGAAAGATTGCTCAGAGGtagaggaaaaaattaaaagtatttttgataGTTCAGCCACAGGAAGTCAAATAAATACGTGTCCACTTGATTTATATGTTAAGACTGAAAACCTGGACAAGGAATTCGATATTAACGAGATGGAAATGTCGATTAAAGCTGAATGTGTTGACATAAAATCGGAAGATGAGGAAAGAAGcGACACACCACTTCAGATCTCCAATATTGTACCATTTGAGGAGAGTGACTGTAAAAATGAAGAAGAGGATGGATGTAAACATGAGAATGGATCAGAAGTGAAAAACAGACAAGAAAGCAAAGtattgtacaaatgtgataaatgtatcTACGAAACTGAAAGTGAAATCCGTTTTACGGCACACTGTGCGAGGCATGAGAAGGATTTGGAAACATATAAGTGTGAATCGTGTGAGTATAAACCTAAAAGTAAGAAATTACTTCAGATGCGCCTGTTGAAGCAAAAATATCCTTCAGAGGTTcagatgtacaggtgtaacgattgTGATTATGAAACTAGAGACAAGAGTTATTTCAAAgggcatcaactgaaacataaagatccttcgcaggttcaaatgtacagatgtaaggactgcgatttcgaaactaaatacaggagAAATCTCGAAAAGCATCAGCTGAatcataaagatccttcgcagattcaaatgtacaggtgtcaggattgcgattatgaaactagaTACAAGAGTTATTTCAaaaagcatcaactgaaacataaagttCCTTCGTACGTTCAAATATACAGGTGTCACGAttgcgatttcgaaactaaatacaagagttatttcaaacagcatcaactgaaacataaagatccttcacaggttcaaatgtacaggtgccacgattgcgattatgaaactaaatacaagagttatttcaaacagcatcaactgaaacataaagatccttcgcagattcaaatgtacagttGTAATGACTGCGAATACAAAACTAAGTACAAGAATGCTTTCAAAGTGCACCGACTGAAACATGAAGATCCTtctcaggttcaaatgtacagttgTAATGGCTGCGAATACAAAACTAAGCATAAGAATGCTTTCAAACTGCACCGACTGAAACATAAGGacccttcacaggttcaaatatacaaatgtaatgactgcgattacaaaactagaCAGAACAGTAATTTCAAACGGCATCAACTgacacataaagatccttcacaggttcaaatgtacaggtgccACGAttgcgatttcgaaactaaatacaatgctaatttcaaacagcatcaactgaaacacaaagatccttctcaggttcaaatgtacaagtgtaacgactgcgattacaaaactagaCACAACAGTAatttcaaacagcatcaactgaaacataaagatccttcacaggttcaaatgtacaggtgcgacgactgcgatttcgaaactaaatataGGACATTTCTCAaaaagcatcaactgaaacataaagatccttcacaggttcaaacgtacaagtgtaacgactgcagtttcgaaactaaatacaacggtaatatcaaacagcatcaactgaaacataaagatccttcgcaagTTGAAATGTACAGGTGCCACGATTGCAATTATGAAACTCCATTCAAGAGTTATTTCAaaaagcatcaactgaaacataaagatccctcacaggttcaaatgtacaggtgtaacgactgtgattatgaaagtaaatacacgaataatattaaaaagcatcaactgaaacacaaagatccttcgcaggttgaAGTGTACGGGTGTAACAAgtgcgattacaaaactaaatacaatagTCTTTTaaaacagcatcaactgaaacataaagattcctcacaagttcaaatgtacaggtgtaacaattgtgattacgaaactaaatacaagagtgtTATCAAACGACACCaagtgaaacataaagatccttctacGTCCAAATGTACAGATGTAAGGACTGcaatttcgaaactaaatacagaagtatcaaacagcaccaactga
Protein Sequence
MADLKETSCRLCFKPVTDESFEVINNIIRDILDVLLLKLKFDSESKEVICNVCRRKLNAALEFKSTCLNTDKTIIPYVDSEQMLQPDLREVYVQEKKIELVRSQKICRLCMQPVESEFRCIREEELEAIKKLIPEMNINIIKGPVVCKPCWDSLCTHNSFLKDCSEVEEKIKSIFDSSATGSQINTCPLDLYVKTENLDKEFDINEMEMSIKAECVDIKSEDEERSDTPLQISNIVPFEESDCKNEEEDGCKHENGSEVKNRQESKVLYKCDKCIYETESEIRFTAHCARHEKDLETYKCESCEYKPKSKKLLQMRLLKQKYPSEVQMYRCNDCDYETRDKSYFKGHQLKHKDPSQVQMYRCKDCDFETKYRRNLEKHQLNHKDPSQIQMYRCQDCDYETRYKSYFKKHQLKHKVPSYVQIYRCHDCDFETKYKSYFKQHQLKHKDPSQVQMYRCHDCDYETKYKSYFKQHQLKHKDPSQIQMYSCNDCEYKTKYKNAFKVHRLKHEDPSQVQMYSCNGCEYKTKHKNAFKLHRLKHKDPSQVQIYKCNDCDYKTRQNSNFKRHQLTHKDPSQVQMYRCHDCDFETKYNANFKQHQLKHKDPSQVQMYKCNDCDYKTRHNSNFKQHQLKHKDPSQVQMYRCDDCDFETKYRTFLKKHQLKHKDPSQVQTYKCNDCSFETKYNGNIKQHQLKHKDPSQVEMYRCHDCNYETPFKSYFKKHQLKHKDPSQVQMYRCNDCDYESKYTNNIKKHQLKHKDPSQVEVYGCNKCDYKTKYNSLLKQHQLKHKDSSQVQMYRCNNCDYETKYKSVIKRHQVKHKDPSTSKCTDVRTAISKLNTEVSNSTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-