Agla006348.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:54626-61180[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2.3 72 3.9 3.8 1 23 296 316 296 316 0.92
2 21 0.0025 0.077 13.2 3.0 1 23 325 347 325 347 0.98
3 21 0.0047 0.14 12.3 1.5 1 23 356 378 356 378 0.98
4 21 0.019 0.57 10.5 1.6 1 23 387 409 387 409 0.99
5 21 0.031 0.94 9.8 3.7 1 23 418 440 418 440 0.98
6 21 0.00034 0.01 15.9 0.4 1 23 449 471 449 471 0.98
7 21 0.003 0.091 13.0 0.8 1 23 480 502 480 502 0.98
8 21 0.32 9.7 6.6 2.1 1 23 740 760 740 760 0.95
9 21 0.018 0.56 10.5 3.5 1 23 769 791 769 791 0.98
10 21 0.0047 0.14 12.3 1.5 1 23 800 822 800 822 0.98
11 21 0.0079 0.24 11.6 1.4 1 23 831 853 831 853 0.99
12 21 0.083 2.5 8.4 3.4 1 23 862 884 862 884 0.97
13 21 0.00058 0.018 15.2 1.0 1 23 893 915 893 915 0.99
14 21 0.2 6.3 7.2 5.1 1 23 924 946 924 946 0.98
15 21 0.0016 0.05 13.8 1.5 1 23 955 977 955 977 0.98
16 21 0.0045 0.14 12.4 4.2 1 23 986 1008 986 1008 0.99
17 21 0.0046 0.14 12.4 1.3 1 23 1017 1039 1017 1039 0.98
18 21 3.3 1e+02 3.4 0.9 1 23 1048 1070 1048 1070 0.97
19 21 0.0027 0.083 13.1 3.2 1 23 1079 1101 1079 1101 0.99
20 21 0.0013 0.039 14.1 1.2 1 23 1110 1132 1110 1132 0.98
21 21 0.0013 0.041 14.1 3.5 1 23 1141 1164 1141 1164 0.97

Sequence Information

Coding Sequence
ATGCAGCCAGAAAACTTGAAAAGAACATTTTGCTCACTGTGTCTAAATACTATAAGCGATATAAATTGCGATGTATCAGGAGAAGTTCTAAAAGACGTACTGGAAGCTGTTTTTCCGAATGTGTATTTGAAGGATATAGATAAACATCCAATATGTAACACGTGTTCCGTAAAATTGTTTGCTGCGTTTAATTTTAAGTCTGCATGTATGAATActgagaatattattttttctcatattaatactaataatacatCAGTAATTGATCTAAAAGAAGTTTATCGAAAGGAGAATggaaatattcaattaatcaATATATCAGAAGATCAAAGATTTTGTCGGTTATGTATGCAGTTGGTAACATATGGATTTGTGTCAGTAAATAAAGTGGACGTTGACATAATCCATACATATCTACCACAAGTTatcTTTGGCGCTACCAGCCATCCTGTTATATGTGGATCATGTTTTGATTCGCTTCGTACCCATGGTGCTTTTTTAAAGAACTGCCTTAAtgcacttaaaaaatttaaaaacattgatAAACAGAGCCACATTAAAACTGATGACATTTCAATAAAACTGGAAGAAGATTGTCAGGATGCACAGGAGAAACATGAAAACATTGACATTCAGTCTTATATTAAATCTGAAGAGATTGAAATAAAGATAGAGAAATATGATCTAGATGGCAATCCACCTTCATTCGATTTAGAtaatgaaacagttgaaaacAAGAGATCCATTTGTGAAAATATAGAGGAAATAAAGTTTGAATGTATATATAAATACGAAACGGGATTAAACGAAAATTGTAATGAAGAAATACCCAGAAGCAAAAAGCCTAGATTTCAGAATTGTGAGCCTTCATTAGATACATCATTGCACCAATGTGATAAATGTAAAGTTAAGCTTAAAACTAATCTGAAACGGCATCAGTTAATACATAAAAGCTTTTCAGAAGTCAAGACGTACAAGTGTGATATATGtagttatgaaactaaatataagaaTCATTTAAAAGAACATCAGTTATGGCACAAAGACCCTtcagaaatccaaatgtacaaatgtgaaaCTTGTACTTACGAAACCAAATATAAGAAAGCTCTAAAAGTTCATCAAATATTACACAAAGACCCTTtagaaatccaaatgtacaaatgtgatattTGTACTTACGAGACTAAATATAAGGGATACATAAAAGAGCATCAGTTAAAACACAAAAACCCTTCAGAAgtccaaatgtacaagtgtgatgcCTGTAGTTTTGAAACTAAACGTAAGAGTCATGTCAAAAGGCATCAGTTGTTGCACAGAAATCCTTCAGAAATCCACATGTACAAATGCGATATTTGTACTTATGAAAGTAGATATAAAGAAGATCTAACAGCACATCAGTTAATACATAAAGACcattcagaaattaaaatgtacaaatgtgatactTGTCCTTATGAAGCTAAACAGAGGAGATATCTAAAAGATCATCAGTTAGTTCACAAAGATCCTTCNTTTAATTTTAAGTCTGCATGTATGAATActgagaatattattttttctcatattAATACTAATAAAACATCAGTAATTGATCTAAAAGAAGTTTATCGAAAGGAGAATggaaatattcaattaatcaATATATCAGAAGATCAAAGATTTTGTCGGTTATGTATGCAGTTGGTAACATATGGATTTGTGTCAGTAAATAATGTGGACGTTGACATAATCGATACATATCTACCACAAGTTatCTTTGGCGCTACCAGCAATCCTGTTATATGTGGATCGTGTTTTGATTCGCTTCGTACCCATGGCGCTTTTTTAAAGAACTGCCTTGAtgcacttaaaaaatttaaaagcattGATAAACAGAGCCACATTAAAACTGATGACATTTCAATAAAACTGGAAGAAGATTGTCAGGATACACATGAGAAACATGAAAACATTGACATTCAGTCTTATTTTAAATCTGAAGAGATTGAAATAAAGATAGAGAAATATGATCTAGATGGCAATCCACCTTCATACGATTTAGAtaatgaaacagttgaaaacAAGAGATCCATTTGTGAAAATATAGAGGAAATTAAGTGTGAATGTATATATAAATATGAAACGGGATTAAACGAAAATTGTTATGAAGAAGTACCCAAAAGCAAAAAGCCTAGATTTCAGAATTGTGAGCTTTTATTAGATACACCATTGTACCAATGTGATAAATGTAAAGTTAAGCTTAAAACGAATCTGAAACGGCATCAGTTAATACATAAAAGCTTTTCAGAAGTCAAAACGTACAAGTGTGGTACGTGtagttatgaaactaaatataagaaTCATTTAAAAGATCATCAGTTATGGCACAAAGACTCTtcagaaatccaaatgtacaaatgtgaaaCTTGTActtacgaaactaaatataagaaaGCTCTAAAAGTTCATCAAATATTACACAAAGACCCTTtagaaatccaaatgtacaaatgtgatattTGTACTTACGAGACTAAATATAAGGGATACATAAAAGAGCATCAGTTAACACACAAAAACCCTTCAGAAgtccaaatgtacaagtgtgatgcCTGTAGTTTTGAAGCTAAACGTAAGAATCATCTCAAAAGGCATCGGTTGTTGCACAGAAATCCTTCAGAAATCCacatgtacaaatgtgatattTGCACTTATGAAAGTAGATATAAAGAAGATCTAACAGTACATCAGTTAAAACATAAAGACCATTCAGAAATCCAAATGTATAAATGTGATACTTGTatttacgaaactaaatacaaaagttgtctgAAAAAGCACCAGTTAATGCACAAGGACTCTTcggaaatccaaatgtacaaatgtgatactTGTGATTATGAAAGCAAATATAAGAAAGGTCTAAAAATTCATCAATTATCTCACAAAGATTCTtcagaaatccaaatgtacaaatgtgataattgttcttatgaaactaaatttaaGAATCATCTAAACGTACATCAGTTAACACACAAAGACCCTtcagaaatccaaatgtacaaatgtgatataTGTgcttataaaagtaaatataagaAAGGTCTAAAAGTCCATCAATTATCACACAAAGACCCATCGGAAATCCACATGTACAAGTGTGATAGTTGTgtttatgaaactaaatataaaggTATTCTAAAATATCATCAGTTAATACACAAAGACAATTTGGAAGTTCAGATATACAAGTGTGATATTTGTACATTTGGAACTAAGTTTAAAAGAAATCTAAAATCGCATCAATTAAAACACAAAGATTCTtcagaaatccaaatgtacaaatgtgaggTTTGCACctacgaaactaaatataaaaatggttTAAATAAGCATCAGTTGATACACAAAGATAGTTTGGAAGTACAGATCTACAAGTGTGATAGATGTACTTATGAAACCAGGCGTAAAAATAATCTCAAAAATCATCAGTTGTCTAAGCATAAAAATCAAGACTCAATTGTTCAATTGTAA
Protein Sequence
MQPENLKRTFCSLCLNTISDINCDVSGEVLKDVLEAVFPNVYLKDIDKHPICNTCSVKLFAAFNFKSACMNTENIIFSHINTNNTSVIDLKEVYRKENGNIQLINISEDQRFCRLCMQLVTYGFVSVNKVDVDIIHTYLPQVIFGATSHPVICGSCFDSLRTHGAFLKNCLNALKKFKNIDKQSHIKTDDISIKLEEDCQDAQEKHENIDIQSYIKSEEIEIKIEKYDLDGNPPSFDLDNETVENKRSICENIEEIKFECIYKYETGLNENCNEEIPRSKKPRFQNCEPSLDTSLHQCDKCKVKLKTNLKRHQLIHKSFSEVKTYKCDICSYETKYKNHLKEHQLWHKDPSEIQMYKCETCTYETKYKKALKVHQILHKDPLEIQMYKCDICTYETKYKGYIKEHQLKHKNPSEVQMYKCDACSFETKRKSHVKRHQLLHRNPSEIHMYKCDICTYESRYKEDLTAHQLIHKDHSEIKMYKCDTCPYEAKQRRYLKDHQLVHKDPSFNFKSACMNTENIIFSHINTNKTSVIDLKEVYRKENGNIQLINISEDQRFCRLCMQLVTYGFVSVNNVDVDIIDTYLPQVIFGATSNPVICGSCFDSLRTHGAFLKNCLDALKKFKSIDKQSHIKTDDISIKLEEDCQDTHEKHENIDIQSYFKSEEIEIKIEKYDLDGNPPSYDLDNETVENKRSICENIEEIKCECIYKYETGLNENCYEEVPKSKKPRFQNCELLLDTPLYQCDKCKVKLKTNLKRHQLIHKSFSEVKTYKCGTCSYETKYKNHLKDHQLWHKDSSEIQMYKCETCTYETKYKKALKVHQILHKDPLEIQMYKCDICTYETKYKGYIKEHQLTHKNPSEVQMYKCDACSFEAKRKNHLKRHRLLHRNPSEIHMYKCDICTYESRYKEDLTVHQLKHKDHSEIQMYKCDTCIYETKYKSCLKKHQLMHKDSSEIQMYKCDTCDYESKYKKGLKIHQLSHKDSSEIQMYKCDNCSYETKFKNHLNVHQLTHKDPSEIQMYKCDICAYKSKYKKGLKVHQLSHKDPSEIHMYKCDSCVYETKYKGILKYHQLIHKDNLEVQIYKCDICTFGTKFKRNLKSHQLKHKDSSEIQMYKCEVCTYETKYKNGLNKHQLIHKDSLEVQIYKCDRCTYETRRKNNLKNHQLSKHKNQDSIVQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-