Agla004375.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:390682-392528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.027 0.82 10.0 0.6 3 23 101 122 100 122 0.88 2 13 0.00033 0.01 16.0 0.6 1 23 136 159 136 159 0.97 3 13 0.13 4.1 7.8 0.1 1 21 204 224 204 225 0.91 4 13 1.4 43 4.5 1.2 1 22 253 274 253 276 0.85 5 13 6.7 2.1e+02 2.4 0.6 1 12 296 307 296 319 0.80 6 13 5.8e-05 0.0018 18.3 0.8 1 23 329 351 329 351 0.98 7 13 1.1e-05 0.00033 20.7 0.8 1 23 357 379 357 379 0.96 8 13 3.4e-06 0.0001 22.2 1.1 1 23 385 408 385 408 0.94 9 13 0.00017 0.0051 16.9 1.0 1 23 416 438 416 438 0.98 10 13 9.3e-07 2.9e-05 24.0 3.1 1 23 444 466 444 466 0.97 11 13 0.0011 0.033 14.4 2.1 1 23 472 495 472 495 0.96 12 13 0.0011 0.034 14.3 4.5 1 23 509 531 509 531 0.98 13 13 9e-06 0.00027 20.9 3.1 1 23 537 560 537 560 0.97
Sequence Information
- Coding Sequence
- atgaaaaaatgcaatgtttGTTTGAAAAAACGTATATCTACTATAAGTGTAAAGAAATCagataaaaataacgtaaaatgGTATACGAAACTGCAAGACGTAATTCCTGAACTGCAATGGTTGGAGAAGTACATGATTTGTAAATATTGTACCAAACAGTTAGAGAAGGCCTGGGAATTTAAAAGATTTGTACTGGATCGTGAAAAAAACTGGAGAAATGAAACGAATGTGAATGGAACTTGTTTAGATAGGGACTGTGATAATACAGAACTTTTCACTGATGACAAAAAAGGGGTATATTGTATAATATGTTTTAAAGTGTTTACGACTATAACTCAACTTCAACaacataaattacaaattcataatgaacagttaaataaaaaaaagattacacAAGAGGTATTTACTTGTTATAATTGTAATGATAGCTTTGATACAAAAGAGAACTTAATAAATCATATTGAAAAAGAACATAAGGGACCCAAATTATGCTCTTTTAAGACAGTATTAGGAAATTCGATAGATGAAGAAACTGTTGAAGGTGTAAGTGAAGATTACGATACTTGGGCAAAACTAACAGACAATGATGTTCAagataattctaaattttattgcaagttatGTGGTCAGCCTTATGCTACGGAAGAAATACTTCAGATACATTATAAAGCATGTCTAAATATTGTAGACAATAAATTGACAAATGTTTGTAAAGAAGAAACTAATCATGGAATCAACGAAGAATCTCGTCCATACTTTTGTGAAGAATGTCGAATAAATTTTACATCAATCCTAgaatttaatttacataatttttctaAACATAATGTTGAAGTGGCACcggttattaaaaaaaggagAGGTCGTAAACCATTAAGAAAATTCAATTGTGAAATGTGTAATGAAGAATTTGGTTACGTAAAATTAGTAGTTGAACACTGCATCTCTGTACATGCTAtggataaaaaaatcattaaaccgTACTCGTGTGAAAAGTGCGATATGCGTTTTGTATCCTCCGCTAATTTGGATCAACATCGGAACTACCACAATAAGAACCGTACCCATATATGCAGCTTGTGCGGTAAAGGCTTTATAACAAAAAGTGACTTAACAGTGCATGAGTATACACATTACAATCGCAGGAACTACAAGTGTACGTTATGCGATAAAGCGTTTAACACAAATAAAAACCTTAGGACTCACAATTTAGTGGTGCACACCGACAGAAGTTTGTGGAAATACGCTTGTTCCATTTGTGAAAAACGTTTCCCTTTAAAGACGAATTATGACCAGCACCTTCGAAGACATACGGGTGAAAAGGAATACGCATGTCATATTTGTAAGAAGCCTTTCATAAGTAAGAGTGAACTACAGAGACACATACATATGCATTCCAACATAAGAGCTTTCAAGTGTAGCAACTGTGATAAGGAATATAAAGAAAGACGCACTTACCAAGCCCATCTAGCGAAAAAACATGGTATCGGAAACGTTAAAGTTACTATAAGGGAGAAAAAATTTGTGTGTCACATTTGCCCCAGTCAGTTTTATGATAAACAGAAGTTGATGAGACACATTTGTAGTCATTCAGGGCTCAAACCATTTCCTTGTTATGCGTGTGACAAGAAGTTCACTGATAAATCGTACTTGAAACATCACTTGAAAACCGCTCATAATATTATAGAACAGTCTAAACTTGAAGCGatacaataa
- Protein Sequence
- MKKCNVCLKKRISTISVKKSDKNNVKWYTKLQDVIPELQWLEKYMICKYCTKQLEKAWEFKRFVLDREKNWRNETNVNGTCLDRDCDNTELFTDDKKGVYCIICFKVFTTITQLQQHKLQIHNEQLNKKKITQEVFTCYNCNDSFDTKENLINHIEKEHKGPKLCSFKTVLGNSIDEETVEGVSEDYDTWAKLTDNDVQDNSKFYCKLCGQPYATEEILQIHYKACLNIVDNKLTNVCKEETNHGINEESRPYFCEECRINFTSILEFNLHNFSKHNVEVAPVIKKRRGRKPLRKFNCEMCNEEFGYVKLVVEHCISVHAMDKKIIKPYSCEKCDMRFVSSANLDQHRNYHNKNRTHICSLCGKGFITKSDLTVHEYTHYNRRNYKCTLCDKAFNTNKNLRTHNLVVHTDRSLWKYACSICEKRFPLKTNYDQHLRRHTGEKEYACHICKKPFISKSELQRHIHMHSNIRAFKCSNCDKEYKERRTYQAHLAKKHGIGNVKVTIREKKFVCHICPSQFYDKQKLMRHICSHSGLKPFPCYACDKKFTDKSYLKHHLKTAHNIIEQSKLEAIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -