Agla006892.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplophora glabripennis
Gene Symbol
-
Assembly
GCA_000390285.2
Location
NW:2753-6031[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.003 0.091 13.0 1.7 1 23 57 79 57 79 0.97
2 21 0.035 1.1 9.6 0.8 1 23 88 110 88 110 0.98
3 21 0.081 2.5 8.5 1.7 4 23 150 169 150 169 0.96
4 21 0.015 0.45 10.8 0.6 2 23 179 200 178 200 0.97
5 21 0.014 0.43 10.8 2.4 1 23 208 230 208 230 0.93
6 21 0.072 2.2 8.6 4.4 1 23 243 265 243 265 0.99
7 21 0.00042 0.013 15.6 6.0 1 23 274 296 274 296 0.98
8 21 7.2e-05 0.0022 18.1 4.5 1 23 305 327 305 327 0.99
9 21 0.00013 0.0039 17.3 1.0 1 23 336 358 336 358 0.98
10 21 0.003 0.091 13.0 1.7 1 23 430 452 430 452 0.97
11 21 0.012 0.36 11.1 1.0 1 23 461 483 461 483 0.98
12 21 0.13 4.1 7.8 1.6 4 23 523 542 523 542 0.95
13 21 0.015 0.45 10.8 0.6 2 23 552 573 551 573 0.97
14 21 0.014 0.43 10.8 2.4 1 23 581 603 581 603 0.93
15 21 0.072 2.2 8.6 4.4 1 23 616 638 616 638 0.99
16 21 0.00042 0.013 15.6 6.0 1 23 647 669 647 669 0.98
17 21 7.2e-05 0.0022 18.1 4.5 1 23 678 700 678 700 0.99
18 21 0.00013 0.0039 17.3 1.0 1 23 709 731 709 731 0.98
19 21 0.0042 0.13 12.5 2.9 1 23 740 762 740 762 0.98
20 21 0.57 17 5.8 6.1 1 23 771 793 771 793 0.97
21 21 0.036 1.1 9.6 2.4 1 23 797 819 797 819 0.98

Sequence Information

Coding Sequence
ATGTACacgatttgtatttttttcagtgaCGCACTGTTGGAAATCCCAGGAGACGAACGCGTGGACTACTCGAGCGAGTGTGGCCTAAGAGATACAGAAACAAAAAATCATAGGCTCGACAGTAAGAAGCACGAATCGAACCACAGCGATTCGACGCAGTTAAAAAAGTACAAATGTGACTCGTGCGATTACGAATCTGTCCGTAAGAAGAACCTTAGACAACACGAGTTCATGCACAAGGACATACCGGCATCCCGAAAGTACCAGTGTTACACCTGCGGTTTTGAAACCAAACGTAGAACCTCCATGGTGGGCCACCAACTGGTACACCGGGACTTTTCTCAAGTACGAACTTTCAAGTACGATGTGTGCGATTACCAGACGATCCACGAATGCTCTCTCAAGAAGCACTCTTTAGTTCCCACGGATCCGTCCCAGAGAGAATCGCACAAATGCGACTACGAAACAGACCGTAAAATCAACCTCACTCGCCACCGGGAAAGACACGATGACCAGGTGCAGACGCGGATGTTAAAATGCGACACTTGCAGTTACGGAGCCAAGAGCAGGAGAACTCTAATCGCCCACCAGAAAAGCCACGAAGCGTCCACCGAGCAAATGTTCATGTGCAACACGTGCGGCTTCGAAACCAAGAACAAGCATTACCTCGTACGACATAACTTGGCACACGGGAAACCCGCAGAATACAAATCCCCCGTGAAGAAGTACAAGTGCGAATTCTGCCATTACGGGTCTTACGCTAAGGTGCACTTACAGCTTCATATGCTGAAACACGGGGACTGTCCCGACATACCGACGTACTCGTGCGGGAAGTGTGATTATAAAACGAAGCGGAAGTGCAACTTGAAGCGCCACCAACTGTCCCACCAAGACTTTTCCCAGGCACGCCAATACAAGTGCCACACGTGCGGTTTCCAAACCAAACAGAAGTCGAACCTCGGTCGTCACCAGCTCACGCACAAGGACACGTCTGAGTTGTTGACTTACAAGTGCGACGTTTGCGGCATGGAGACCATTCACAAGTACAACTTCATAAAGCACCAGGCGATCCACAAGGATCGCTCGCAGGTACGGATGTACAAGTGCGACGTGTGCGACTTTGAANAGTTCAGCTGTGTCGTCCAtgaCGCACTGTTGGAAATCCCAGGAGACGAACGCGTGGACTACTCGAGCGAGTGTGGCCTAAGAGATACAGAAACAAAAAATCATAGGCTCGACAGTAAGAAGCACGAATCGAACCACAGCGATTCGACGCAGTTAAAAAAGTACAAATGTGACTCGTGCGATTACGAATCTGTCCGTAAGAAGAACCTTAGACAACACGAGTTCATGCACAAGGACATACCGGCATCCCGAAAGTACCAGTGTTACACCTGCGGTTTTGAAACCAAACGTAGAACCTCCATGGTGGACCACCAACTGGTACACCGGGACTTTTCCCAAGTACGAACTTTCAAGTACGATGTGTGCGATTACCAGACGATCCACGAATGCTCTCTCAAGAAGCACTCTTTAGTTCCCACGGATCCGTCCCAGAGAGAATCGCACAAATGCGACTACGAATCAGACCGTAAAATCAACCTCACTCGCCACCGGGAAAGACACGATGACCTGGTGCAGACGCGGATGTTAAAATGCGACACTTGCAGTTACGGAGCCAAGAGCAGGAGAACTCTAATCGCCCACCAGAAAAGCCACGAAGCGTCCACCGAGCAAATGTTCATGTGCAACACGTGCGGCTTCGAAACCAAGAACAAGCATTACCTCGTACGACATAACTTGGCACACGGGAAACCCGCAGAATACAAATCCCCCGTGAAGAAGTACAAGTGCGAATTCTGCCATTACGGGTCTTACGCTAAGGTGCACTTACAGCTTCATATGCTGAAACACGGGGACTGTCCCGACATACCGACGTACTCGTGCGGGAAGTGTGATTATAAAACGAAGCGGAAGTGCAACTTGAAGCGCCACCAACTGTCCCACCAAGACTTTTCCCAGGCACGCCAATACAAGTGCCACACGTGCGGTTTCCAAACCAAACAGAAGTCGAACCTCGGTCGTCACCAGCTCACGCACAAGGACACATCTGAGGTGTTGACTTACAAGTGCGACGTTTGCGGCATGGAGACCATTCACAAGTACAACTTCATAAAGCACCAGGCGATCCACAAGGATCGCTCGCAGGTACGGATGTACAAGTGCGACGTGTGCGACTTTGAAACGAAGCACAAGAGCAGCCTCGGGACGCACCGAGAGAAGCACACGATTCCTCGGGGAACGGAAACTTACAAGTGCCACCTTTGCGACTACGTAACCGCCTGTAAGAAAAATTTGGCTACCCACCGGTTCAAGCATAAACCGTTGTATAGGTGCGATACTTGTGACTACGAGACTAAATGGAAGTTCCACCTCTCTCGGCACATGGTAGTACACGGTAGCTCTTCCAAGGAGCGAAAGCACAGGACCCACTAA
Protein Sequence
MYTICIFFSDALLEIPGDERVDYSSECGLRDTETKNHRLDSKKHESNHSDSTQLKKYKCDSCDYESVRKKNLRQHEFMHKDIPASRKYQCYTCGFETKRRTSMVGHQLVHRDFSQVRTFKYDVCDYQTIHECSLKKHSLVPTDPSQRESHKCDYETDRKINLTRHRERHDDQVQTRMLKCDTCSYGAKSRRTLIAHQKSHEASTEQMFMCNTCGFETKNKHYLVRHNLAHGKPAEYKSPVKKYKCEFCHYGSYAKVHLQLHMLKHGDCPDIPTYSCGKCDYKTKRKCNLKRHQLSHQDFSQARQYKCHTCGFQTKQKSNLGRHQLTHKDTSELLTYKCDVCGMETIHKYNFIKHQAIHKDRSQVRMYKCDVCDFEXFSCVVHDALLEIPGDERVDYSSECGLRDTETKNHRLDSKKHESNHSDSTQLKKYKCDSCDYESVRKKNLRQHEFMHKDIPASRKYQCYTCGFETKRRTSMVDHQLVHRDFSQVRTFKYDVCDYQTIHECSLKKHSLVPTDPSQRESHKCDYESDRKINLTRHRERHDDLVQTRMLKCDTCSYGAKSRRTLIAHQKSHEASTEQMFMCNTCGFETKNKHYLVRHNLAHGKPAEYKSPVKKYKCEFCHYGSYAKVHLQLHMLKHGDCPDIPTYSCGKCDYKTKRKCNLKRHQLSHQDFSQARQYKCHTCGFQTKQKSNLGRHQLTHKDTSEVLTYKCDVCGMETIHKYNFIKHQAIHKDRSQVRMYKCDVCDFETKHKSSLGTHREKHTIPRGTETYKCHLCDYVTACKKNLATHRFKHKPLYRCDTCDYETKWKFHLSRHMVVHGSSSKERKHRTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-