Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:333438-338682[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0076 0.23 11.7 0.7 3 23 281 302 279 302 0.95

2 14 0.039 1.2 9.4 1.7 1 23 332 354 332 354 0.97

3 14 0.14 4.4 7.7 9.6 1 23 360 382 360 382 0.96

4 14 0.00018 0.0056 16.8 0.9 1 23 388 410 388 410 0.98

5 14 0.043 1.3 9.3 2.5 1 20 413 432 413 434 0.94

6 14 4.1 1.3e+02 3.1 0.6 3 23 466 484 464 484 0.75

7 14 1.7e-05 0.00052 20.0 0.1 3 23 500 520 499 520 0.98

8 14 3.6e-05 0.0011 19.0 1.4 1 23 526 548 526 548 0.99

9 14 2.7e-07 8.3e-06 25.7 1.6 1 23 554 576 554 576 0.99

10 14 1.1e-05 0.00032 20.7 6.2 2 23 582 603 582 603 0.97

11 14 8.9e-06 0.00027 20.9 1.7 1 23 609 631 609 631 0.98

12 14 4.3e-07 1.3e-05 25.1 3.6 1 23 637 659 637 659 0.99

13 14 0.00056 0.017 15.3 3.1 1 23 665 687 665 687 0.98

14 14 4.7 1.4e+02 2.9 2.7 1 23 697 720 697 720 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0076	0.23	11.7	0.7	3	23	281	302	279	302	0.95
2	14	0.039	1.2	9.4	1.7	1	23	332	354	332	354	0.97
3	14	0.14	4.4	7.7	9.6	1	23	360	382	360	382	0.96
4	14	0.00018	0.0056	16.8	0.9	1	23	388	410	388	410	0.98
5	14	0.043	1.3	9.3	2.5	1	20	413	432	413	434	0.94
6	14	4.1	1.3e+02	3.1	0.6	3	23	466	484	464	484	0.75
7	14	1.7e-05	0.00052	20.0	0.1	3	23	500	520	499	520	0.98
8	14	3.6e-05	0.0011	19.0	1.4	1	23	526	548	526	548	0.99
9	14	2.7e-07	8.3e-06	25.7	1.6	1	23	554	576	554	576	0.99
10	14	1.1e-05	0.00032	20.7	6.2	2	23	582	603	582	603	0.97
11	14	8.9e-06	0.00027	20.9	1.7	1	23	609	631	609	631	0.98
12	14	4.3e-07	1.3e-05	25.1	3.6	1	23	637	659	637	659	0.99
13	14	0.00056	0.017	15.3	3.1	1	23	665	687	665	687	0.98
14	14	4.7	1.4e+02	2.9	2.7	1	23	697	720	697	720	0.92

Sequence Information

Coding Sequence: ATGAATTCCTCGGAAGAACAAGTTGTTACTTTGAGCGAGATTTGCCGGGTATGTCTAATAAAAACTGATAACATGAGACACTTATTAGAGCCAAGTGACGAAGTAATACAAACGTTAACAAAATTGTCATCAGTTTCTAATGTTGAGattgaaattaatgaaattctACCTTGCTTTCTATGTAATAGTTGTgaagaaaaactgaaaatttcatATGAATTCCAACAGTTATGTCAAAAATcacataactttattttaaattgtcttTCGACAAGTTCTGTAAGTTGCAAGGTAAATTCATTTAAACCTCttcaatttgaaaataactcGGGAAAGTCTGGCATACAATCAGTAGATAACAATTCAGACGGTTTCATCAGTTTCATTGACAGTGACGGACTTGCAAAAAAGGCATTAATATCTTATTATTCAGTACCTGATATAGACTTAAGTACCCACAATGATAATGGTACACTAaaagagaatccagaaagtgaattaaaaaattgggCACAAGTAGTAGTAATTGAAAATGTCAAAGATGGCGACAATGATAACAGTGGTGCACAGAGAGAGAATTCAGAAAATGCATTGGAAAGTTCCACACGAAATGTTAATGAAAACGTTGAAGGTGATGGTTTGGTAGAAAGGAATTCAGACAATGCAACGGAAAATATAGAAGTTAAGAAAATCGTAGTGATAcatgaaaacaataaaaagccTGCTGAAGTGGAAAAGAGAACTAAATATAACCAAACAATGAGACTATCACAGTTTTCGCGGGAAGATGTAGAGAAGATCATTGAagaatttagagaaaaatgtatgAAGCACGTTAACTGTAAGCATTGTGGTTTTATAGCGAAAGATTCTAGAGCCCTTTCTGCACACATGACACGACTGCACAAagaaatgaAGGAGCATTGGTGTTTTTGGTGTAACGATAATTTCGATAACCTACAAGAGCACAACCGAACTGTTCACAAAGACAATTTTAAATGTCCTCTGTGCGGTAAATACAAAACCAATACTGGTCACTTCATGGAGCATTTAGCTAGTCACTGTAcCGAACGGAGGCATATTTGTACAGTGTgttgtaaatgttttatttcacaGAGGCACTTACGAATGCACCTCAAAATCCATACAAACCAAAAGCCGTACCGATGTCCGGTTTGTTCGAAGGTCTTTACGTTGATCACAAAGTTcaataatcatttaaaaattcataaaagtcatAAGTGTAAGGTATGTGAAGAACGTTTCCCAACCTTAGAGGAGTACAACGTACACAAATGTTTCGCGAAGAGGGAGTCCGAAAAGGATATCGTTAACACTGCAGTCGAGGAGTTAGCGGAGTCTAAACAGACaagTGAGAAGATGCCGCAGAATTTTTGCGAAACTTGCAATAAGAGAGTCAGAAGTCTCCAGAAACATATCGCAAGCGTTCACTCCGATTCTGTTGAtgtaaaagataataaaatattaagggCTCTTTGTCCTTACTGTGGAAAACAATTTGTGACTGTTGCAAAATTGACTGTACATATAAGGTATCACACTGGAGAAATGCCTTATAAGTGTTCGTACTGTGATAAAAGGGTGAGAACAAGGATCCAACTAGTAATGCACGAGAGAACCCATACTGGCGAAAGGccttataaatgtaaattctgtGGGAaggCTTTCGCCCAGTCCAGTGGTCTGAAAACCCATTTGAAACGGCATACGGGTAGGCCAGAGGAGTGCTTTATGTGCCATAAAAGGTTCTGTAGACCGTCGGAACTGAAACTACATATGAGGACACATACAGGGGAAAAGCCCTTCGAATGCAAGATTTGTGGCCAACGATTCACTCAGCAAAGTCGTCTAACGGAGCACAGCAGAAACCACACTAACGAAAGACCTTACAAATGTGATTATTGTGATAAAAGCTTCAAACAGTCTTCTACCCTGCGATATCATACTAATATGCATTTAGGTAGGAAACCCTACAAATGCTCTCAGTGCCCATACGAGAGCCGTCAGAGTCATAATCTGAAGCAGCACTTATTGCAGCACGAGAAGGAACCTAAGGTTGAAAGAATCCACGAATGCGACATATGTTGTCAGAGTTTTATAAATCTCGAAATGTATTCGTTACATTACGCTAACAAACATGGGTCTATAGTAGCAGCAGGCTTTGCTAAGGAAGATCTAATAGAACCGTCAACTGTAGAAGTTATAGACCATTTACACGAATTTACCTAA
Protein Sequence: MNSSEEQVVTLSEICRVCLIKTDNMRHLLEPSDEVIQTLTKLSSVSNVEIEINEILPCFLCNSCEEKLKISYEFQQLCQKSHNFILNCLSTSSVSCKVNSFKPLQFENNSGKSGIQSVDNNSDGFISFIDSDGLAKKALISYYSVPDIDLSTHNDNGTLKENPESELKNWAQVVVIENVKDGDNDNSGAQRENSENALESSTRNVNENVEGDGLVERNSDNATENIEVKKIVVIHENNKKPAEVEKRTKYNQTMRLSQFSREDVEKIIEEFREKCMKHVNCKHCGFIAKDSRALSAHMTRLHKEMKEHWCFWCNDNFDNLQEHNRTVHKDNFKCPLCGKYKTNTGHFMEHLASHCTERRHICTVCCKCFISQRHLRMHLKIHTNQKPYRCPVCSKVFTLITKFNNHLKIHKSHKCKVCEERFPTLEEYNVHKCFAKRESEKDIVNTAVEELAESKQTSEKMPQNFCETCNKRVRSLQKHIASVHSDSVDVKDNKILRALCPYCGKQFVTVAKLTVHIRYHTGEMPYKCSYCDKRVRTRIQLVMHERTHTGERPYKCKFCGKAFAQSSGLKTHLKRHTGRPEECFMCHKRFCRPSELKLHMRTHTGEKPFECKICGQRFTQQSRLTEHSRNHTNERPYKCDYCDKSFKQSSTLRYHTNMHLGRKPYKCSQCPYESRQSHNLKQHLLQHEKEPKVERIHECDICCQSFINLEMYSLHYANKHGSIVAAGFAKEDLIEPSTVEVIDHLHEFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -