Agla007732.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:252905-353355[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.0071 0.22 11.8 1.9 1 23 393 415 393 415 0.98 2 32 0.013 0.4 11.0 2.8 1 23 424 446 424 446 0.98 3 32 0.48 15 6.0 2.2 1 23 455 477 455 477 0.97 4 32 0.0017 0.052 13.7 3.7 1 23 486 508 486 508 0.97 5 32 0.0013 0.04 14.1 4.0 1 23 517 539 517 539 0.98 6 32 0.00051 0.016 15.4 4.4 1 23 548 570 548 570 0.98 7 32 0.049 1.5 9.1 1.7 1 23 579 601 579 601 0.96 8 32 0.0013 0.04 14.1 0.7 1 23 610 632 610 632 0.96 9 32 0.0012 0.036 14.2 1.5 1 23 641 663 641 663 0.98 10 32 0.0091 0.28 11.4 3.1 1 23 672 694 672 694 0.99 11 32 0.0019 0.058 13.6 3.7 1 23 703 725 703 725 0.98 12 32 0.024 0.73 10.1 3.1 1 23 734 756 734 756 0.97 13 32 0.0025 0.076 13.2 1.4 1 23 765 787 765 787 0.98 14 32 0.0057 0.18 12.1 1.0 1 23 796 818 796 818 0.98 15 32 0.0083 0.25 11.6 0.6 1 23 827 849 827 849 0.96 16 32 0.27 8.4 6.8 4.0 1 23 858 880 858 880 0.97 17 32 0.045 1.4 9.3 1.2 1 23 889 911 889 911 0.93 18 32 0.4 12 6.3 1.2 1 23 920 942 920 942 0.95 19 32 0.0067 0.21 11.9 2.9 1 23 951 973 951 973 0.98 20 32 0.18 5.6 7.3 4.5 1 23 982 1004 982 1004 0.97 21 32 0.011 0.33 11.2 1.9 1 23 1013 1035 1013 1035 0.96 22 32 0.0013 0.04 14.1 2.2 1 23 1044 1066 1044 1066 0.97 23 32 0.35 11 6.4 4.8 1 23 1075 1097 1075 1097 0.97 24 32 0.012 0.37 11.1 1.6 1 23 1106 1128 1106 1128 0.96 25 32 0.007 0.21 11.8 2.7 1 23 1137 1159 1137 1159 0.96 26 32 0.0002 0.0061 16.7 0.7 1 23 1167 1189 1167 1189 0.99 27 32 0.0085 0.26 11.5 1.9 1 23 1198 1220 1198 1220 0.98 28 32 0.00012 0.0036 17.4 0.9 1 23 1229 1251 1229 1251 0.97 29 32 0.0033 0.1 12.8 2.0 1 23 1260 1282 1260 1282 0.98 30 32 0.012 0.36 11.1 1.6 1 23 1291 1313 1291 1313 0.97 31 32 0.23 7.1 7.0 1.7 1 23 1322 1344 1322 1344 0.96 32 32 0.024 0.73 10.1 7.1 1 23 1353 1375 1353 1375 0.97
Sequence Information
- Coding Sequence
- ATGGACAATAAAAAGGAATATCTGTGCAGACTGTGTCTTAGTGCaatatgtgatgaaaatttcgAAGTGATAAACGaaattactacaaaaaacttAGAGATGATCTTACCAAACACAAATTTGGAGGTAAGCGAAAAGCCAGTGATGTGTAATATTTGTTCCGATAGACTCAAAGATGCATTCAGTTTTAAGTCTGCCTGCCTTAGTAACAGTAACTGCGCGAGTGTCGTGGAAAACGTACCCAAAATTAAAGTGGAATGTTCTGATGAAAATATTTGTGACAGTAAATCTTTTgatgagaaaaaatgttttctgtgtGTGCAGTTGATAGTTGACCATCCTATCTCATTAGCTGCAGAAGGAGAGGAAATTAGTTCGGCTAGAAATATGATCCAGAAATATATACCCGAGATGgaCTTAAAAGACAAGAACCCTGTGATTTGCGAAACCTGCCACCAAAGCGTTCAACAAATTTGCAACTTCCTCCAAAGCTGCATGgatgtagaagaaaaaataatggaCTTTCGTAAACGTAAAGAAAAAGACATTACGTTTATCGATTTAAAGGACGTGATACAATTTTCATCGGAAGAACAGGAGGAAGGTCTGAAACAAAACGAGATGTGTGGCCCAGAAACGAATGTGCCTGAAAGTAACATTAAAACGGAGGCTTTCATGGAAGCTGACTATTTGAATGTGTGCATTAAAACCGAAGAGCCCAGCAACGATGAAATAGAAATTGAACCCGAGGAACAGATCACACTGAAtgaaaatatcaatatcaaGAATGAGGAAGTCGATGTTAAATTGGAAGTAACTTACAGTGAAAGCGCCACGTCAGTACCCTGCACGGACGTCTTGTTAGAGGAAAGCAACGATGTGTGGGACATCCTCAGAGAAGAGAGCCACAATTTTTCAGAAGAAGAAGGCAACTCACACAGAAAGAGAAGTAGCTCATCTTTAGACTTTTTACCTGTTTCAACAGCTATGAAGATCCGGTGCGGGTCGTGCAGGAAAATCGTGAAAAGCGGCCCTAACTTCATGCACTCGAAGATCTTCTTTCGAGACACAGTCCTCGACAACACCTCCTATAAGTGCGAGACTTGTAAACGCGAAACCGTTGACTCGCTCTACTCGCCTAACCTAACCTATAACAATCGTTTTGAAGCGGTGAAGTTCAAATGtagtatatgtatgtatgagACAAAATACCGCAGTGCTCTCAAGTCTCATATGTTGAAACATAAAGACAGGTCGGaagttaaaatgtataaatgcGACTACTGTAACTATGAAACCAGACACAAAACGGCATTGAAACCCCACATTTTGAAACACCAGGATCCATCGCAAGTTGAGATGTTCCACTGCGACTCCTGCGAATATCAGACAAGATACAAACCTGCTCTGAAGTCTCATCTGCTCAACCACAAAGACCCGTCGGAGATCAACATGCATTCTTGCGACATGTGCGATTACAACACAAGGTTCAAAAGTTCCCTCAACTCGCATATGCTCAAGCATATGGACCCGTCGGAGATTCAGATGTTTAAATGCGAGATCTGCACCTATGAGACTAAACATAAAACGTCGTTAAAGTCTCATATGCTTAACCATAAAGATCCGTCAGAGGTGAAGATGCATAAATGCGAAGAGTGTGACTACAACACTAAGTTTAAGAGTTCCTTGAAGTCACACATGCTAAAGCACAAAGATTCTTCTGAAATTCACATGTATAAGTGCGACTCCTGCGAATATGAGACTAGACATAAAAGCGCGTTGGCGTCTCACAGTTTAAACCACAAAGACAACTCTGAGGTGCCACTTTATCTGTGCAACTTGTGCCCTTACGAGACCAAGCGAAGGGCCAACTACAAATTGCACATCATGACCCATAAAGACCCCtcagaaatccaaatgtacacATGCGAGACATGCGGATACAGCACCAAGTACAAAAGCGTCCTCAAATCTCACAAATTAATTCACCAGGATCCGTCAGAAGTGGAAATGTACCGGTGCCACCTGTGCGACTACGAAACCAGACGGaggcaaaatataaaaatgcacGTTCTGACACATATGGACCCCTCCGAAATTCCCATGTACACGTGCGACCACTGCGAGTACAAAACCAAGTACAAGAGTGCTCTCAAGTCGCATCTTCTAAACCACAAAGATCCCTCCGAAATACAAATGTTCAACTGCGAGAGCTGCGAGTACAAAACAAAGTACAAGTTCTCGCTCAAATCGCACATGCTGAGTCACAAATCCGCCTCAGAAGTACCCACGTTCACTTGCGAGTTGTGCCCGTATGAGACCAAGCGTAAAGCGAACTACCACTCGCACATTTTAATCCACAAAGACCCGTCTGAGGTCAAAATGTTCGAGTGCGACACGTGCGAGTACAAGACAAGGTACAGAAGCGCGCTCAGCTCGCACTTGCTCAGTCACAAAGATCGAACCGAGACGCAGATGTACAACTGCGATGAATGTCCGTACGAGACCAAGTACAAAGGCGCGCTTAGGACACACAAACTGAACCACAAAGATTCTTCGGAACTGAAAACATACTCGTGCACTTTGTGCACGTACGAGACGAAACGTAAGATGAACTTCCATGCTCACAGTTTGAGCCATAAGGATCCGTCGGAGGTTCAGATGCACGCTTGTGACACTTGCGAGTACAAAACTAGGTACAAAAGCGCGCTTAAATCTCACGCCTTGGCCCACAAAGATCCCTCGGAGATTGAAATGTACAAGTGCGAGTTCTGTGAGTATCAATCCAGGTATAAGAGTGCGATTAAGACACACGTTGTGAACCACAAACAACCCTCGGAGATTCAGATGTTCAAGTGTGAAAGCTGCGAGTATCAAACTAGGCATAAAGGTTCGCTCAAAGCGCATTTGTTGAAGCATAAAAGTCCCTCGGAAGTACCTATGTTCACTTGCGAATGTTGCCCGTACGAGACCAAGCGTAAGACCAGCTTCAAGTCGCACATGTTGATGCATATGGACCCCTCGCAGATACAAATGCACGCTTGCGACAAATGCGAGTACaaaacgaaatataaaagtgccCTTAACTCGCACGTTTTATCCCACAAGGACCCGTCGGAGATAAAGATGCATACTTGCGAGGTCTGCCAATACACCACAAAGTATAAAGGAGCGTTAAAGTCGCACATGCTTAACCACAAAGATGCGTCCGAGGTCACGGTGTACACCTGCGAGTTTTGTACGTACGAGACGAGGCGTAAGACTAACTTTCACATACATTCACTGTCCCACAAGCAACCGTCAGAGATACAAATGCACTCGTGCGACGTATGCGAgtacaaaacaaaatacaagAGCGCTCTGAACTCGCACGCCTTGTCCCACAAAGACCCCTCGGAGATACAGATGTTCAAATGTCACACTTGCGAGTACGAGACGCGGTACAAAAGCGCCTTAAAATCACACGTAGCGAACCACAAACCCAACGAAGGGCAGTCGTACAAATGCGACGGTTGCGAGTTCGAAACCAACAACAAATCTACGTTAAAATCGCATATTATCACACATAAAGATCCGTTGGAGGTGGTTATCTACACTTGCGACTCTTGCAGCTACGAAACGAAGCGCAAAACTAACTACCAATCGCATTTGTTGATACACAAGGATCCGGCAGACGTTAAGATGTACCAGTGCGACGAGTGCGACTACGCGACGAAATACAAGAGCTCCTTGAAGTCGCACGTGTTGAACCACAAGGACCCATCGGAGATCGAGATGTTTAAATGCGACATGTGCAGCTACGAATCGAGATTTAAGAGTAGCCTCAAGTCACACATTCTCAACCACAAAGATCCCTCGGAAATAGACATGTTCAAGTGCGACGAGTGCGACTACGAGACGAAGTATAAGCGCGCGTTGTCTTCGCACAAACTGAACCACATGGACCCGTCGCAGATTCCCATGTTCAAGTGCGCGTCTTGCGACTACGAGACCAAGTATAAGAACGCGTTGAAGTTACACGTGGCGCACCACAAGGATCCGTCGGAAGTGGAGATGCATTCGTGCGAAAAGTGCGATTATAAATCGAAGTACAAGTCGTGTCTGAAGTCGCACATGGCGAAGCACGAGGAGCTTTCCGTCATTTGA
- Protein Sequence
- MDNKKEYLCRLCLSAICDENFEVINEITTKNLEMILPNTNLEVSEKPVMCNICSDRLKDAFSFKSACLSNSNCASVVENVPKIKVECSDENICDSKSFDEKKCFLCVQLIVDHPISLAAEGEEISSARNMIQKYIPEMDLKDKNPVICETCHQSVQQICNFLQSCMDVEEKIMDFRKRKEKDITFIDLKDVIQFSSEEQEEGLKQNEMCGPETNVPESNIKTEAFMEADYLNVCIKTEEPSNDEIEIEPEEQITLNENINIKNEEVDVKLEVTYSESATSVPCTDVLLEESNDVWDILREESHNFSEEEGNSHRKRSSSSLDFLPVSTAMKIRCGSCRKIVKSGPNFMHSKIFFRDTVLDNTSYKCETCKRETVDSLYSPNLTYNNRFEAVKFKCSICMYETKYRSALKSHMLKHKDRSEVKMYKCDYCNYETRHKTALKPHILKHQDPSQVEMFHCDSCEYQTRYKPALKSHLLNHKDPSEINMHSCDMCDYNTRFKSSLNSHMLKHMDPSEIQMFKCEICTYETKHKTSLKSHMLNHKDPSEVKMHKCEECDYNTKFKSSLKSHMLKHKDSSEIHMYKCDSCEYETRHKSALASHSLNHKDNSEVPLYLCNLCPYETKRRANYKLHIMTHKDPSEIQMYTCETCGYSTKYKSVLKSHKLIHQDPSEVEMYRCHLCDYETRRRQNIKMHVLTHMDPSEIPMYTCDHCEYKTKYKSALKSHLLNHKDPSEIQMFNCESCEYKTKYKFSLKSHMLSHKSASEVPTFTCELCPYETKRKANYHSHILIHKDPSEVKMFECDTCEYKTRYRSALSSHLLSHKDRTETQMYNCDECPYETKYKGALRTHKLNHKDSSELKTYSCTLCTYETKRKMNFHAHSLSHKDPSEVQMHACDTCEYKTRYKSALKSHALAHKDPSEIEMYKCEFCEYQSRYKSAIKTHVVNHKQPSEIQMFKCESCEYQTRHKGSLKAHLLKHKSPSEVPMFTCECCPYETKRKTSFKSHMLMHMDPSQIQMHACDKCEYKTKYKSALNSHVLSHKDPSEIKMHTCEVCQYTTKYKGALKSHMLNHKDASEVTVYTCEFCTYETRRKTNFHIHSLSHKQPSEIQMHSCDVCEYKTKYKSALNSHALSHKDPSEIQMFKCHTCEYETRYKSALKSHVANHKPNEGQSYKCDGCEFETNNKSTLKSHIITHKDPLEVVIYTCDSCSYETKRKTNYQSHLLIHKDPADVKMYQCDECDYATKYKSSLKSHVLNHKDPSEIEMFKCDMCSYESRFKSSLKSHILNHKDPSEIDMFKCDECDYETKYKRALSSHKLNHMDPSQIPMFKCASCDYETKYKNALKLHVAHHKDPSEVEMHSCEKCDYKSKYKSCLKSHMAKHEELSVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014847;
- 90% Identity
- -
- 80% Identity
- -