Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:686140-691189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0092 0.28 11.4 0.4 2 23 57 78 56 78 0.96

2 17 0.32 9.9 6.6 3.4 1 23 82 104 82 104 0.97

3 17 2.9e-05 0.0009 19.3 1.2 1 23 110 132 110 132 0.99

4 17 4.4e-05 0.0014 18.7 0.2 1 23 138 160 138 160 0.95

5 17 6.2e-06 0.00019 21.4 0.2 1 23 166 189 166 189 0.98

6 17 8.9e-06 0.00027 20.9 2.6 1 23 195 217 195 217 0.98

7 17 0.5 15 6.0 0.3 2 23 224 245 223 245 0.96

8 17 4.1 1.3e+02 3.1 0.7 3 23 254 274 253 274 0.82

9 17 0.0013 0.038 14.2 0.6 2 23 278 299 278 299 0.97

10 17 4.8e-06 0.00015 21.8 1.6 1 23 308 330 308 330 0.98

11 17 1.1e-06 3.4e-05 23.8 1.1 1 23 337 359 337 359 0.98

12 17 2.4e-05 0.00073 19.6 0.6 1 20 365 384 365 387 0.94

13 17 0.00071 0.022 14.9 4.4 1 23 393 415 393 415 0.97

14 17 1.9e-06 5.9e-05 23.0 1.9 1 23 421 443 421 443 0.99

15 17 0.008 0.25 11.6 4.4 1 20 448 467 448 469 0.95

16 17 0.23 7 7.0 1.7 2 23 479 500 479 500 0.94

17 17 0.095 2.9 8.2 0.4 1 23 506 528 506 528 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0092	0.28	11.4	0.4	2	23	57	78	56	78	0.96
2	17	0.32	9.9	6.6	3.4	1	23	82	104	82	104	0.97
3	17	2.9e-05	0.0009	19.3	1.2	1	23	110	132	110	132	0.99
4	17	4.4e-05	0.0014	18.7	0.2	1	23	138	160	138	160	0.95
5	17	6.2e-06	0.00019	21.4	0.2	1	23	166	189	166	189	0.98
6	17	8.9e-06	0.00027	20.9	2.6	1	23	195	217	195	217	0.98
7	17	0.5	15	6.0	0.3	2	23	224	245	223	245	0.96
8	17	4.1	1.3e+02	3.1	0.7	3	23	254	274	253	274	0.82
9	17	0.0013	0.038	14.2	0.6	2	23	278	299	278	299	0.97
10	17	4.8e-06	0.00015	21.8	1.6	1	23	308	330	308	330	0.98
11	17	1.1e-06	3.4e-05	23.8	1.1	1	23	337	359	337	359	0.98
12	17	2.4e-05	0.00073	19.6	0.6	1	20	365	384	365	387	0.94
13	17	0.00071	0.022	14.9	4.4	1	23	393	415	393	415	0.97
14	17	1.9e-06	5.9e-05	23.0	1.9	1	23	421	443	421	443	0.99
15	17	0.008	0.25	11.6	4.4	1	20	448	467	448	469	0.95
16	17	0.23	7	7.0	1.7	2	23	479	500	479	500	0.94
17	17	0.095	2.9	8.2	0.4	1	23	506	528	506	528	0.96

Sequence Information

Coding Sequence: ATGGATACTCATACTTCAAACTCTGCCCTTTCACCAGAAGTAGCTTTGATAAAAACCGAGACGGATATTGATTTCTGCGACTCCAGTGGGGACTGGACTGGACACCTGGCAgccaataaattaaaagtagaaATCATAGAACCAGGTGATTTAAATCAGGAGAAAGTAACATGCAAGACCTGCGAGGTAATATTCATTAACGAACACGAGCTAAAAATTCATAACATGATTCACTCCCCCGATCACAACTGTTTCATCTGCAAAGAGTTCGTGAAGAACAGGTTCCAGTTTGTGGGACACGTGCGAAAACATATGTGCGCTAAGCCCTTTAAGTGTCCGAATTGCGAGAGGACCTTCCCGACTTCTAGGGAAACGAAACTACACCAACGAGTGCACAGCAACGACAGGCCTTACATGTGTACGGAGTGCGGAAAAGCCTTTAAACAAATCACCACCCTTAAGGATCACGAAGTAGTACATACCGGCGAGAAAAGGTTCAAATGTAAAATATGCGAGGGCGCTTTTGCTACTGCGACAAGCCTTCGGAGACACATAAGAGTAATGCACGAAACCGTACGCTCCTTTAAGTGCCACTTTTGCAAGGAAGCCTTCACCAGCAAGCAGGCTTTGAAACAGCACATGGCCATCCATAAGGACGTCGACCCGCTCAAGTGCCAACTGTGCGGGGAAAGGATGGCGAACGGTCAGGAGTACACGGCGCACAAGAACAAACATATTGAGTTGAAACAGTCGGGGAACTGCGAGTATTGCGGCAACAAGACGTTCTATTTCGGACTGAAGGAGCATATTGAGAAGATGCACCAGCCGAgGTCGTGCGACATTTGCAACCTGGTCTTTTACGACGAGAAGTCGATGGAAAACCACCGCAAGAGCCACCAGGAGGAGCCCCTGCGCGAGGACTTCACCTGCAACATCTGCAACAAGCAGTTCGAGTTCCCGCGCTACCTCAAGGCGCACATCAAGCGCCACGAGGAGaactacaaaaaattcaagTGTGACCTGTGCGAGAAGACCTTCTCCTCCAAACGCGACCTCACCGACCACCTGAACGTCCACGCCAACGTCAAGAACTACAGATGCAACGTTTGCGACAAAGCGTTCCGTACCAAACAGAGCGTGTCGAAGCACATGCCCATACATTCCGACAAGAGGCCGTTTCAGTGCAAGTTGTGCGACAAACGCTTCAAGAAGCAGTCGATCCTACGGAAACATTCCTTCACGCACACCCGCGCCCGTCCGTTCCAGTGCGACATGTGCGACAAGCGGTACAAGTCCAAGGAGTCGTTGCGGGTGCACAGGCTGACGCACCAGAAGAACAAGTACCAGTGTAACGTGTGCGAGAAATCGTTCAAGTTCAATACGGTCTTCAAGAGACACGAGTGTTTCAGGAATAGGCTGGAGTGGAACGTACGCAGGTGCGGGTATTGTAAGCGGCAGTGTAGGTCGCAGGTGACTTACGCTTACCACGTCCTCGCCCATTCGAGGGACAGGCTGTTCAGGTGCGACGTTTGCGGCGCGGGTCTGCGGTACGAGTATCACGTTAGGCTGCACGGAATCAAACATAGGAGCGAAGTGAAGCTGAAACAGGGAGGTAGTAGTGgttag
Protein Sequence: MDTHTSNSALSPEVALIKTETDIDFCDSSGDWTGHLAANKLKVEIIEPGDLNQEKVTCKTCEVIFINEHELKIHNMIHSPDHNCFICKEFVKNRFQFVGHVRKHMCAKPFKCPNCERTFPTSRETKLHQRVHSNDRPYMCTECGKAFKQITTLKDHEVVHTGEKRFKCKICEGAFATATSLRRHIRVMHETVRSFKCHFCKEAFTSKQALKQHMAIHKDVDPLKCQLCGERMANGQEYTAHKNKHIELKQSGNCEYCGNKTFYFGLKEHIEKMHQPRSCDICNLVFYDEKSMENHRKSHQEEPLREDFTCNICNKQFEFPRYLKAHIKRHEENYKKFKCDLCEKTFSSKRDLTDHLNVHANVKNYRCNVCDKAFRTKQSVSKHMPIHSDKRPFQCKLCDKRFKKQSILRKHSFTHTRARPFQCDMCDKRYKSKESLRVHRLTHQKNKYQCNVCEKSFKFNTVFKRHECFRNRLEWNVRRCGYCKRQCRSQVTYAYHVLAHSRDRLFRCDVCGAGLRYEYHVRLHGIKHRSEVKLKQGGSSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310775;
90% Identity: -
80% Identity: -