Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:179007-187633[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 8.7e-05 0.0027 17.8 1.7 1 23 38 60 38 60 0.99

2 17 1.8e-05 0.00055 19.9 2.6 1 23 66 88 66 88 0.98

3 17 0.0098 0.3 11.3 4.6 1 23 95 117 95 117 0.99

4 17 5.9e-05 0.0018 18.3 4.4 1 23 123 145 123 146 0.96

5 17 0.00031 0.0096 16.0 5.3 1 23 179 201 179 201 0.97

6 17 0.83 26 5.3 0.2 5 23 259 277 248 277 0.83

7 17 0.0078 0.24 11.7 0.1 2 23 284 306 283 306 0.93

8 17 1.5e-06 4.6e-05 23.4 2.9 1 23 335 357 335 357 0.99

9 17 8e-05 0.0024 17.9 0.4 1 23 363 385 363 385 0.93

10 17 1.2e-06 3.8e-05 23.6 0.3 1 23 391 413 391 413 0.98

11 17 0.0075 0.23 11.7 0.3 1 23 419 441 419 441 0.94

12 17 3e-05 0.00092 19.3 3.6 1 23 447 469 447 469 0.98

13 17 0.00026 0.0078 16.3 0.2 1 23 475 497 475 497 0.96

14 17 0.0013 0.04 14.1 2.0 1 23 503 525 503 525 0.98

15 17 3.2e-06 9.7e-05 22.3 0.8 1 23 531 553 531 553 0.97

16 17 1.9e-06 5.8e-05 23.0 1.0 1 23 559 581 559 581 0.99

17 17 0.029 0.89 9.9 2.1 1 23 587 609 587 609 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	8.7e-05	0.0027	17.8	1.7	1	23	38	60	38	60	0.99
2	17	1.8e-05	0.00055	19.9	2.6	1	23	66	88	66	88	0.98
3	17	0.0098	0.3	11.3	4.6	1	23	95	117	95	117	0.99
4	17	5.9e-05	0.0018	18.3	4.4	1	23	123	145	123	146	0.96
5	17	0.00031	0.0096	16.0	5.3	1	23	179	201	179	201	0.97
6	17	0.83	26	5.3	0.2	5	23	259	277	248	277	0.83
7	17	0.0078	0.24	11.7	0.1	2	23	284	306	283	306	0.93
8	17	1.5e-06	4.6e-05	23.4	2.9	1	23	335	357	335	357	0.99
9	17	8e-05	0.0024	17.9	0.4	1	23	363	385	363	385	0.93
10	17	1.2e-06	3.8e-05	23.6	0.3	1	23	391	413	391	413	0.98
11	17	0.0075	0.23	11.7	0.3	1	23	419	441	419	441	0.94
12	17	3e-05	0.00092	19.3	3.6	1	23	447	469	447	469	0.98
13	17	0.00026	0.0078	16.3	0.2	1	23	475	497	475	497	0.96
14	17	0.0013	0.04	14.1	2.0	1	23	503	525	503	525	0.98
15	17	3.2e-06	9.7e-05	22.3	0.8	1	23	531	553	531	553	0.97
16	17	1.9e-06	5.8e-05	23.0	1.0	1	23	559	581	559	581	0.99
17	17	0.029	0.89	9.9	2.1	1	23	587	609	587	609	0.98

Sequence Information

Coding Sequence: ATGGAAATAGAGAATGTAACGATTAAATCTGAACAAATAGATGAGGATGATATAattgaagataaaataaatataaaagaagaAGGTTTACAATCAACAAATGAAACGCCTTATAAATGTGGTATATGTGGTCACCGAACAACTACAGATACCCTACTTAAAGTGCACATGAAAATGCATTTAGTTAAACGATTACATCAATGCAatatttgtaagaaaacttTTAGTTTTGTTACTGAATTGAACAGTCACATCTTGACCCACACAGAAGAAAAGAATAGTTATCAATGTGAAGTATGTCGCAGAGACTGCTTTACTGAAGAAGATTTGCATAAACATTATCGAGTTCACACAAAAGAGAAACCTTTCAAGTGTAAATTGTGTTTTAGGTCTTTTTCAGATGATTCATATCTGAGAGTTCACGAAAGGACGCATCATGGTGAAGACTATTTTAAAAACGTCATGAAAAAGAACGGCACTTTTGTTGATCCCAATTTAGTGAAAAATGTTATTGAAGATAGTACACCAAAAGATTTCAAATGCGACATTTGCCAGAAATGCTTCTGCAACGAAGAATTCCTAAAACTCCACATCGAAAACCATTTGAGCGAGGGCGTTCATCACGATATTTTTGGAGCGGAAGACCCTCTTGCCACAGTAGTTTTACCGACTGATATCAGCGATAAGTACCTGGAGAATTGCAGAACGACCATACCTGTAGATAAACAAGATCCGTCCAGTTTTGAATGCGAATACACAGATGATAACGGCAAGAAGTGTTCTAGGAGGTTCGGAGAAAAGGAGGCATACGATATTCATGTTAAAACCCATGAGAATTCGAATAGTATATCCTGTCGTCTATGTAAAATTAAGTTTGCTGATGATTCGGAGCTGTCTGCCCATATGTTGGGCATGCATGGAACTTTCGAGCCTGACAAACTAGgtttggAGGACAATATGATCCGCTGCAAGGAAATGGTGAAAGGCAAGGAAAAAACCGTGTTTAGGTGCACGATTTGTACAAAGCATTTTCCTGTCCCGAGCAAACTGAGGTCTCACATGCGCACACATACTGGTGAAAAACCATTTAAGTGCGACGTTTGCAATAAATCGTTTGGCACTGCTGGCAGCCTGAAGGATCATGGCTATCTTCACACCAATAAAAAGCCCTACAATTGTACAATTTGCGAGAAGGGGTTCACGAAAAATAGTGCACTAGaggaTCATATTCGATCCCACACGGGAGAACGGCCATACGAATGTAACATTTGCAAGAAGAGATACAGGACGATAGTTATCCTCAATCAGCACCTGCTGGCCCATGCCAAGGAAAAGCCGTTTAAGTGTGACGTGTgcaacaaaagttttatttacctTTGTAATTTAAAGTACCATATGGTTACGCACACGGGGAGCAAACCTTTTGCCTGCAGCTTGTGCGACAGAAGTTACAGTATAAAAAACGCCCTGAAAATCCACATGATGGACCATAGAGgaGAGAAGCCCTTTAAATGTCGGTTCTGCGACAAACAATTTACCGCAGGGAACAGCCTCAAGAAACACGAACGTATACACACGGGAGAGAAACCGTACATCTGCTCCGTGTGCAAAAAAGGTTTCAGTCAGTCTAGCTCGTTGAGTCGGCATCTGGACTCCCATAAAGGGGAGAAACCGTACAGATGTACCGTTTGCCAGAGAGGCTTTACGTCTGCCAGTTATTTGAAGATTCATCTAAAAATGCACCAAGGCGAACCGCCGTATCAGTGTAAACAGTGCAACGAAAAGTTCATGGTAGTACAAAAATACAGGGTTCATTTAAAACAacacaaaaaaggaaaaaacgATGGGAACCCAAAGTCCAAAAAGGGGAAAACAGTCGACAAAGAGGAAAATGAGAATTCTGCTTTAAAGTCAGAAATCGAAGATGAGATAGAAATTAAGAAGGAATTAGACGAGAATTAA
Protein Sequence: MEIENVTIKSEQIDEDDIIEDKINIKEEGLQSTNETPYKCGICGHRTTTDTLLKVHMKMHLVKRLHQCNICKKTFSFVTELNSHILTHTEEKNSYQCEVCRRDCFTEEDLHKHYRVHTKEKPFKCKLCFRSFSDDSYLRVHERTHHGEDYFKNVMKKNGTFVDPNLVKNVIEDSTPKDFKCDICQKCFCNEEFLKLHIENHLSEGVHHDIFGAEDPLATVVLPTDISDKYLENCRTTIPVDKQDPSSFECEYTDDNGKKCSRRFGEKEAYDIHVKTHENSNSISCRLCKIKFADDSELSAHMLGMHGTFEPDKLGLEDNMIRCKEMVKGKEKTVFRCTICTKHFPVPSKLRSHMRTHTGEKPFKCDVCNKSFGTAGSLKDHGYLHTNKKPYNCTICEKGFTKNSALEDHIRSHTGERPYECNICKKRYRTIVILNQHLLAHAKEKPFKCDVCNKSFIYLCNLKYHMVTHTGSKPFACSLCDRSYSIKNALKIHMMDHRGEKPFKCRFCDKQFTAGNSLKKHERIHTGEKPYICSVCKKGFSQSSSLSRHLDSHKGEKPYRCTVCQRGFTSASYLKIHLKMHQGEPPYQCKQCNEKFMVVQKYRVHLKQHKKGKNDGNPKSKKGKTVDKEENENSALKSEIEDEIEIKKELDEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -