Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:75090-78969[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0017 0.052 13.7 1.6 2 23 156 177 155 177 0.97

2 16 0.0016 0.048 13.8 1.6 3 23 184 205 182 205 0.92

3 16 0.00022 0.0069 16.5 0.3 3 23 220 241 218 241 0.94

4 16 0.00046 0.014 15.5 1.3 2 23 256 277 255 277 0.96

5 16 0.0012 0.038 14.2 3.2 1 23 283 305 283 305 0.99

6 16 1.5e-06 4.6e-05 23.4 0.7 1 23 313 335 313 335 0.99

7 16 1.4e-07 4.3e-06 26.6 1.5 1 23 340 362 340 362 0.98

8 16 0.05 1.5 9.1 8.1 1 23 368 390 368 390 0.98

9 16 1.4e-06 4.3e-05 23.4 0.9 1 23 396 418 396 418 0.98

10 16 0.0011 0.034 14.3 2.6 1 23 424 446 424 446 0.97

11 16 6.2e-06 0.00019 21.4 0.7 3 23 454 474 452 474 0.96

12 16 1.2e-07 3.7e-06 26.8 0.1 2 23 480 501 479 501 0.97

13 16 4.8e-05 0.0015 18.6 1.3 1 23 507 529 507 529 0.98

14 16 3.4e-05 0.0011 19.1 1.7 1 23 535 557 535 557 0.99

15 16 3.6e-05 0.0011 19.0 4.0 1 23 563 585 563 585 0.98

16 16 0.21 6.4 7.2 0.0 1 20 591 610 591 612 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0017	0.052	13.7	1.6	2	23	156	177	155	177	0.97
2	16	0.0016	0.048	13.8	1.6	3	23	184	205	182	205	0.92
3	16	0.00022	0.0069	16.5	0.3	3	23	220	241	218	241	0.94
4	16	0.00046	0.014	15.5	1.3	2	23	256	277	255	277	0.96
5	16	0.0012	0.038	14.2	3.2	1	23	283	305	283	305	0.99
6	16	1.5e-06	4.6e-05	23.4	0.7	1	23	313	335	313	335	0.99
7	16	1.4e-07	4.3e-06	26.6	1.5	1	23	340	362	340	362	0.98
8	16	0.05	1.5	9.1	8.1	1	23	368	390	368	390	0.98
9	16	1.4e-06	4.3e-05	23.4	0.9	1	23	396	418	396	418	0.98
10	16	0.0011	0.034	14.3	2.6	1	23	424	446	424	446	0.97
11	16	6.2e-06	0.00019	21.4	0.7	3	23	454	474	452	474	0.96
12	16	1.2e-07	3.7e-06	26.8	0.1	2	23	480	501	479	501	0.97
13	16	4.8e-05	0.0015	18.6	1.3	1	23	507	529	507	529	0.98
14	16	3.4e-05	0.0011	19.1	1.7	1	23	535	557	535	557	0.99
15	16	3.6e-05	0.0011	19.0	4.0	1	23	563	585	563	585	0.98
16	16	0.21	6.4	7.2	0.0	1	20	591	610	591	612	0.93

Sequence Information

Coding Sequence: ATGACAgatctaaatataaaaattgtttttaataacttATCTCCGACTGTGAATGATATGAAAACCATATGTAGAATATGTATGACACATCTCCAAAATAatggaattttaatatttcagtcAGGAGGTCAAGATGTATCAAATAAGATCAAGGCATTTGCTTCGATAGAGGTCGTAGAGGGAGATGGATTACCTTCTtctgtttgtaaaatttgtCTTGAACTATTAGAAAAagcttatttattaaaaaagcaatGTGAAGAATCGGACAAGGTTCTAAGAAGCTACttgtcaaattcaaataaaatttttaactatgaCCCAGACTGTGATATAAACGAAGTTGAGAGTGTTGATGATGTCGATGGCTGCAATTCAGTGGAATCCATCAATGGGAATGAagttataaaagaaaaacaaaacataataaGTAGAACGTTAAACAAACTAGACCCAACAGAATTAAAATGTGATAATTGCTCAAGCACCTTTCAGAAATTAAACCAATTAAAACTACACATGCGAgtgcatagaaaaaaaaacgtcaattGTAAAACTTGtctgaaatcgtttaattcttcATATGAATTAACACAGCACAATAAGTTGCAACACGGTAGTTTTCAtaagagaaaaattgaagaaacaaCACACTTGTGTTCGGTTTGCCAAGAAAAGTTCTCAGATAATGCTGCTCTAATAGACCATATGCTTGTAAAACATACAGAGAAAAGAGTGAATGTATCCGATAAATCTCGAGAATTAATCTGcaacatttgtaataaaacCTATTTGAACCACAGAAACTTGACGGCTCATATGGGGACTCACACGGGCAATAAACCATTCCAGTGCAACATCTGTGAGAAACGCTTTACTCAAGGGCGAGCCTTTGCCTGCCACATGAGAACCCATTCTGACATAATCGAAAAACCATATAAATGCAACGTTTGCGAAAAGGAGTTTGCAAAGGAATCTCAGTTAACCGtccacataaaaaaacataGCGGCCAGTCACATACCTGTACAATTTGTGGAAAAAGCTACAGCAACTCTGgaaatttaaagGGTCACATGAGGTTACACACTGGCGATAAGCCTTATACATGTCACATTTGCCATCGCAAGTTTGCCCAAAGCAACGCTCACTCCTATCACATGAAAACTCATTTCGGGGAGAAACCGTTTTCCTGTGACATCTGCTCAAAAATGTTCACGACCAACGGACAACTTATCAATCATCGACGATTACATACAGgTGAAAGACCATTCGCTTGTACAATGTGCCCTAAAAGATTTACACAGAAATTCGCGTGTACGATTCACATTATGACCCACACTGGAGACAAGCCACATCTCTGCAGTATTTGCGGTAAAAAATACTCCCAAGGTAGCCAACTTGCGGAACACATGAGGGTACACAACGGTGAAACACTGCAGTGTAACGTTTGTGGGAAGGCTTACACCACCACGGGAAACCTCGCCGCGCACATGCGTACCCACACGGGCATCAAACCCCACGTTTGCGACGTGTGTAACAAAGCATTCTACGTTCCCAACAAACTGGCTAAGCATAAACGCACTCACACGGGAGACAGGAAATACAGCTGCAACGATTGTTCTAAGAAGTTCATGTCTTTGGAATCGTTAAAAATCCATTCTAGGACTCATTCGGGTGAACGTCCTTATCCTTGTCACTACTGCGATAAGAGTTTTATTAGCGGATCCCATCGTACCGCCCATTTGAAAACTCACGTTGAGATAAAGTCCCACGTTTGCAGAGTGTGCTCTGTCAGTTTTGAGAGTTCTGCTGAAGCAGAGGCGCATCAGGCTGTGTGTAGCAAATCTGTGAGGGACGCTTTCACAAATTTGAGCGGAGAATTTCTATAA
Protein Sequence: MTDLNIKIVFNNLSPTVNDMKTICRICMTHLQNNGILIFQSGGQDVSNKIKAFASIEVVEGDGLPSSVCKICLELLEKAYLLKKQCEESDKVLRSYLSNSNKIFNYDPDCDINEVESVDDVDGCNSVESINGNEVIKEKQNIISRTLNKLDPTELKCDNCSSTFQKLNQLKLHMRVHRKKNVNCKTCLKSFNSSYELTQHNKLQHGSFHKRKIEETTHLCSVCQEKFSDNAALIDHMLVKHTEKRVNVSDKSRELICNICNKTYLNHRNLTAHMGTHTGNKPFQCNICEKRFTQGRAFACHMRTHSDIIEKPYKCNVCEKEFAKESQLTVHIKKHSGQSHTCTICGKSYSNSGNLKGHMRLHTGDKPYTCHICHRKFAQSNAHSYHMKTHFGEKPFSCDICSKMFTTNGQLINHRRLHTGERPFACTMCPKRFTQKFACTIHIMTHTGDKPHLCSICGKKYSQGSQLAEHMRVHNGETLQCNVCGKAYTTTGNLAAHMRTHTGIKPHVCDVCNKAFYVPNKLAKHKRTHTGDRKYSCNDCSKKFMSLESLKIHSRTHSGERPYPCHYCDKSFISGSHRTAHLKTHVEIKSHVCRVCSVSFESSAEAEAHQAVCSKSVRDAFTNLSGEFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01014842;
90% Identity: -
80% Identity: -