Agla001679.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:37243-40705[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00088 0.027 14.6 0.7 2 23 53 75 52 75 0.95 2 21 0.0023 0.07 13.3 0.7 1 23 99 121 99 121 0.98 3 21 0.0015 0.045 13.9 0.5 1 23 125 147 125 147 0.98 4 21 0.0056 0.17 12.1 0.3 1 23 153 176 153 176 0.95 5 21 9.7e-05 0.003 17.7 2.9 1 23 182 204 182 204 0.98 6 21 0.027 0.81 10.0 0.2 1 23 210 233 210 233 0.90 7 21 0.00015 0.0047 17.0 2.1 2 23 245 267 244 267 0.95 8 21 8.7e-05 0.0027 17.8 2.0 3 23 281 301 279 301 0.96 9 21 6.1e-05 0.0019 18.3 1.0 1 23 307 329 307 329 0.98 10 21 5.6e-06 0.00017 21.5 0.1 1 23 335 357 335 357 0.98 11 21 0.28 8.4 6.8 0.7 2 23 440 462 439 462 0.94 12 21 0.05 1.5 9.1 0.1 1 23 481 504 481 504 0.97 13 21 0.0039 0.12 12.6 2.0 1 23 508 530 508 530 0.98 14 21 0.0024 0.074 13.3 2.1 1 23 536 559 536 559 0.98 15 21 0.039 1.2 9.4 0.4 1 23 565 587 565 587 0.88 16 21 0.0063 0.19 11.9 0.8 1 23 593 616 593 616 0.96 17 21 0.00066 0.02 15.0 0.7 2 23 628 650 627 650 0.96 18 21 3.4e-05 0.001 19.1 1.0 3 23 664 684 662 684 0.96 19 21 9.4e-05 0.0029 17.7 1.1 3 23 692 712 690 712 0.98 20 21 4.8e-07 1.5e-05 24.9 0.5 1 23 718 740 718 740 0.98 21 21 0.027 0.82 10.0 0.1 1 21 746 766 746 767 0.96
Sequence Information
- Coding Sequence
- ATGTCAaggattaaaattcttataataaggcgtGAAGGCAAGTCCCCAAAGTCGAGtacgaaattaaaaatttcaaaaaaagagCAAAAACCCAAATCAAGGAGCACGAAAAGGTACATCCCCAAGCTAAAACCCAATCAGAGAGCGCGAAGTTGGATGTGCAAGATTTGCTTTGAAGAGTTCGCCTCGAGAAAAGACCTCTTCAACCACAGAAAGTCCATCCACGAAGACACTGACGACATCGTCAACAGAGAGGAAGCGCAGAAATTCATATACGATGAGGTCCATGATTTTTACACTTGCAATAACTGCTCGGCAGAATTTCAAACAAAAGAAGAGGTGGAGAAGCACTACGAGACGCACGAAGAAAAATACCAGTGTCAGATTTGTAACAAAACTATCTCGGGCGCTTTGAACTTTTCTTCGCACATGCAGCAACACAGGGAAGACAAACACTTTCCTTGTCCCTTATGCAACCACATAACCAGCAGAAAATCGGCCATGTTGATCCACATAGTTAGGCTACACTTCAGAAAGTACGATTTCCAGTGCCGATCCTGCGGGAAGTGTTTCAACGATGCGTCTACGTTCAAAGAACATGAAAACATCCACTTGGGCTTAAAACCGTTCATCTGCATCGTCTGCAACAAGGAATTCGTCTACTCCCGCTACCTCGTCGCCCATCAGGTGCGAAACCACAGGGTGCGGGTTTTAGACAAAGACTCCAAGACCCAGTGCCACATGTGCTCGAGGATATTCGCCAGGAACGAAACCTTAGTGAAGCACATGCTCAACAAACACCTGACATACCACGAGGGCCCTGCCGAGAAGAAACATCTCTGCGACGTGTGCGGCCAGGGCTTTTCCAGGACAGACAAACTGAAAATCCACTATAGGAAGCACACGGGCGAGAAACCCTTCTCGTGTGTCTATTGCAGCAAGAGCTTCATCAAGAAAGACTACCTAATAATGCACGAGAGAATCCATAACGGGGAGAAACCTTACATTTGCGAAGTGTGCGGGAAAAGCTTTAACCAAGGCGCCCCCCTCAGGATCCACATGCGGAGTCACACGGGGGAGAGGCCGTTCTTTCCGGCTCTAGAAGTGGAACTAAGCGTCGGAGACAGCTGCGACCTAACAAGCCTATACAAGAAAGACAAAAAGAAATCTCCCGACAAATCCTTGctcttaaaaaagaaaatcaaagtGGAAATAGATGACGACGAATACACCCCCCCAGGGTACAAAAAGAAGAAGAGGGTGAAGAAGATAAAACCTTTGGAGAAGAAGATAAGGAAACAGGAGCACAAGATTTGGACCTGCAGAAGGTGTTTAGTGGAATTCGAGACCAGGCGCGACCTCACCGAACACACTAAATTATACCACGTGGAAGAACCGAAAGACCAGCACACTTTCAAGTACGACGAAGAACAGGACCAGTACACGTGCAATACTTGTTCAGCTGAATACCAAACGAAGGGGGAAGTAGAAGAGCATATTTCCAAAGTACACGAGGAGTTTTACACCTGCGAGGTATGCAAGCATACCTCGAAGAAGGCGTACAGCTTCGCTGTACATATGAAAGCTCACAGTACGGACGACTCTTACACCTGTCCGTTATGCAGCTACAACACCCCTAGACGGACATGTTTACAGACTCACATCAACCGGGTGCACTACCACAAGTTCTACTATACGTGTGCTACTTGCGGAAAAGGCTTCAACGATTCCGTCATCTTCAAAGAGCACAACAACGAGCATTTGGGAATAAAACCGTTCGTTTGCGTGGTGTGCAACAAAGAGTTCGTCTACTCGAGGTACATGCTCATACACCAAACGAGGTACCACACTGTCCATATAGAGGGTACCCTCCACAAAACCCAGTGCAGCATCTGCCTCAAAGTGTTCAGCAAAGTCGCCACCCTTCTCAAACACATCACCACCAAGCACAGCAACACCGGCGACGACAAACCCGAGAAGCGCCATCTGTGCGACATGTGCGGCAAGGGGTTCGGTACGTCAGATAAACTGAAGATACACTACCGAATCCACACGGGGGACAAGCCGTTCGGCTGCAGGTACTGTGATAAGAGATTCACCAAGAAGGACTACTTGGTGATGCACGAAAGGGTGCATACGGGTGAGAAACCCTACCCCTGTGAGTACTGCGGTAAATGTTTCAACCAGGCAGCGTCGTTAAGGATCCACGTTCGAGGGCATACTGGCGAAAGACCTTACGTCTGCCAGTTCTGTAACGGGGGATATATTTCTCGGGGATCTCTCAACTTGCACATGAAAATCTGTAATGGTGTCGCCACCTAA
- Protein Sequence
- MSRIKILIIRREGKSPKSSTKLKISKKEQKPKSRSTKRYIPKLKPNQRARSWMCKICFEEFASRKDLFNHRKSIHEDTDDIVNREEAQKFIYDEVHDFYTCNNCSAEFQTKEEVEKHYETHEEKYQCQICNKTISGALNFSSHMQQHREDKHFPCPLCNHITSRKSAMLIHIVRLHFRKYDFQCRSCGKCFNDASTFKEHENIHLGLKPFICIVCNKEFVYSRYLVAHQVRNHRVRVLDKDSKTQCHMCSRIFARNETLVKHMLNKHLTYHEGPAEKKHLCDVCGQGFSRTDKLKIHYRKHTGEKPFSCVYCSKSFIKKDYLIMHERIHNGEKPYICEVCGKSFNQGAPLRIHMRSHTGERPFFPALEVELSVGDSCDLTSLYKKDKKKSPDKSLLLKKKIKVEIDDDEYTPPGYKKKKRVKKIKPLEKKIRKQEHKIWTCRRCLVEFETRRDLTEHTKLYHVEEPKDQHTFKYDEEQDQYTCNTCSAEYQTKGEVEEHISKVHEEFYTCEVCKHTSKKAYSFAVHMKAHSTDDSYTCPLCSYNTPRRTCLQTHINRVHYHKFYYTCATCGKGFNDSVIFKEHNNEHLGIKPFVCVVCNKEFVYSRYMLIHQTRYHTVHIEGTLHKTQCSICLKVFSKVATLLKHITTKHSNTGDDKPEKRHLCDMCGKGFGTSDKLKIHYRIHTGDKPFGCRYCDKRFTKKDYLVMHERVHTGEKPYPCEYCGKCFNQAASLRIHVRGHTGERPYVCQFCNGGYISRGSLNLHMKICNGVAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328436;
- 90% Identity
- iTF_01014839;
- 80% Identity
- -