Agla004388.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:392785-397106[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.5e-05 0.0011 19.0 2.3 1 23 123 146 123 146 0.98 2 24 0.0011 0.033 14.3 0.2 1 20 173 192 173 194 0.96 3 24 0.19 5.8 7.3 1.8 1 21 208 228 208 229 0.94 4 24 0.0075 0.23 11.7 2.6 1 21 241 261 241 262 0.95 5 24 0.47 14 6.1 0.4 1 23 275 298 275 298 0.86 6 24 0.045 1.4 9.3 0.2 1 23 303 326 303 326 0.91 7 24 1.1 34 4.9 0.6 1 19 345 363 345 364 0.84 8 24 0.00019 0.0059 16.7 1.1 1 23 378 400 378 400 0.96 9 24 4.6e-05 0.0014 18.7 0.3 3 23 408 428 407 428 0.96 10 24 6.6e-06 0.0002 21.3 3.3 1 23 434 457 434 457 0.97 11 24 0.0014 0.043 14.0 5.4 1 23 465 487 465 487 0.98 12 24 0.00014 0.0044 17.1 0.2 1 23 493 515 493 515 0.96 13 24 0.00043 0.013 15.6 2.9 1 23 521 544 521 544 0.97 14 24 0.033 1 9.7 5.6 1 23 558 580 558 580 0.96 15 24 1.3e-05 0.0004 20.4 2.9 1 23 586 609 586 609 0.97 16 24 1.3 39 4.7 3.7 1 19 784 802 784 804 0.97 17 24 0.00022 0.0067 16.5 1.6 1 23 817 839 817 839 0.98 18 24 0.00014 0.0043 17.1 0.5 2 23 846 867 845 867 0.96 19 24 0.00082 0.025 14.7 6.2 1 23 873 896 873 896 0.96 20 24 0.059 1.8 8.9 3.7 1 23 904 926 904 926 0.97 21 24 7.8e-06 0.00024 21.1 6.5 1 23 932 954 932 954 0.99 22 24 0.00092 0.028 14.6 0.6 1 23 960 983 960 983 0.97 23 24 0.00091 0.028 14.6 2.2 1 23 999 1021 999 1021 0.98 24 24 1.5e-05 0.00046 20.2 3.5 1 23 1027 1050 1027 1050 0.97
Sequence Information
- Coding Sequence
- ATGGATTCACAGCAATGTTGCATAATATGTTTAGatagaaaaaaatctgtacAGAATATAACGTTAGTAGATGAAACGAATgttaaattttctgaaaaattgcgGTACATTGCTCCAGAAGTGGAATGGTTAGGTGAATACGCAATATGTGAGAGATGTACAAATGAGTTAAACAATGCTTGCAAATTTAGAGCGCAATGCTTGTCGGTCAACGTAGAGAGAAACAATTTGAAACATGAAATTATTGACTATACTAACTATTCTAATGACGCCATCGATGATGAGAATAATGACTATGATACTGATACCACCAAAGAAGAATCTAATGCTGACACACATCCCATATTTAATAAAGGTGGTGATTTTTATGTATGCTACGATTGTGGTGAAAAGTGTACAACAAAAAAAGATCTGATAAACCACATTAAGAAATCACATGGTGCTTTAAGAGAGAGTATAAACAGTACTGAAAATGAATTGAATCACGAAGACAATGAAGTTTATAGAGTAAAAGAGTTTCCGTGCACCAAATGTGGTAGGAGATACGTTCTTGAAAGTACTTTAAGACAACATATGTATGATTGTGATGGAATTAAAAGACACGGTAAAGCAAAGTCCGATTACCAGTGTGATaagtgtttaaaatattattccaCTCAAAAGATATTAAAGGCTCACAAAAAGAAATGTGAAGGTGAACGGAAGTGTAGAAAAACAGAATTCCAGtgtacaaaatgtaataaatattatataagtttaaagACGTTAAAAGATCATTACAAAAGAGGGTGCAAAAAAGACAGAGAGGATAATTCAAATGTGTTTTTCTGCAAAATTTGTGATGAGTATTTTAAGTCTGTACTTATATTAAGGCAACACGTTTTATCTGAGCATAAAACCTCGGAATACATCtgtgatatttgtttcgtaaattTTAACACACAAGAAGAATATGAAATACACAATAATGCAAAACATGCTTTGGGCAGTGTCAAAACCACAAAAAGAAAAGGCAGAATAACTTCCAGAAGATTTACTTGTGAAGTTTGTAATGAGGAATTTACATTATTGAAATCAGTAATAGAACACTGCGTGAACTTTCATTCCATGGAGGAAAAATCAATAAGACCTTACGCCTGTGAAAAATGTGATAATCGTTTTCGATCttctacaaatttaataaaccaTACGTTGTACCACGATAGAAACCGTACCAATATTTGTAGCTTTTGTGGGAAGAGCTTCATTACGAAAAATGACTTAACGGCACATGAAAGTATTCATTTCAatagaagaaattataaatgCAACAAATGCGAAAAAGCGTTCAAAACCAACACTAATCTTCGAACCCATCACTTGATAGTACATACAGATCCATCCTTGTGGAAATATACATGTCAATACTGTAATAAGCGTTTCCCACAAAAATCCAATCACGATCAGCACTTGCGTCGACATATAGGCGAGAAGAACTTTATATGCCCCCTTTGCAAAAAGCCCTTTGCCAGCAAAAGCGAGATGCAGGAGCACGTTAGTTACCATTCGAACGTGAGAGCTTACAAATGTACAACTTGTGGaaaagaatatagaaaaaaacacaCATACGAGGTTCATCTGGCCAAAGTTCACGGCATTGGGAATGTGAAAATTCCAGTCAGGGAAAAGAAACACGCTTGCCATATATGTCCAAGTCGTTTTTATGACAAACTTAAATTAGCAAGACACCTCTGCACTCATTCCGGACTGAAACCATACCCCTGCTATGCTTGcgataaaaaatttacagacAAATCTTACTTGAAGCACCACTTGAAAACTGCTCATAATATAATCGAAGAATCTAAATATGAGTGGAACAAATTGAATACCACTATAAAAATGACCAGCAGCGAGCAGAAATGTTGTGTCTGCCTCAACAGTTCTCTAACTTTAAATAGATTGTCTAGAAAGGATGACAACGATATATCACTACTCACAAAACTCAGAATTACCATGCCACAAATTGAATGGCTTAGGACGTATCAAATATGTGAGCAGTGTACAAATTTATTGAACATAGTTTATACATTTCGGGAGACTTGTATAAAGTCCGACAATATTCGTAAACAATTAGATACAATTAATCTACTTAAAAAAGAAGTAGGTTACGTAAAAACAGAGGATCGTCAGGATAGTTCAGAAGAGAACGAACCTGATAACGATGTAAAAGATGAGGATGACGATGATGAAGAAGACTgtaatgatgataatgatgcCAGTTGTAGTGATGATGACAAAGActataaagtaaatttaaaagatatcAAGGaagaatcTTCCACGAAAAGGAAGCGAAAAGTGCTCGTTTTTCATTGCGAACACTGTACGAATAGTTACGCTTCAAGCACCCTTCTTGTAAAGCACTGTGTAGAACAACATGGAATGGAAGGTAAAACCGTACGACCCTTTGTGTGTACGAGATGTAACAGCCGTTTTGGGAATTCGTCGAATCTCATGCAGCATATAAAATATCACGATGCTGTTCGTTGTAATGTGTGCACATTCTGCGGGAAAGGCTTTATCACAAAAACCGATTTAAATATCCACGAGAAGCAGCACTTGAATAAGAGGGAGTATAAGTGTGAGACATGCACAAAGTGCTTTAATACTCATAAAGATTTGAGATCTCATAAGTTAGTAGTTCACACAGACCCgcagttttggaaatatttctgCGGTATATGCAGCAAAAAGTTCCCCATCAAGTCGAATTACGACTGTCACATGCGACGGCACACGGGCGATAAAAAATTCGAATGCCACCTTTGCGACAAGAAGTTCACAGATAAGTGCGTCCTGCAGCGACACATGCGGACGCACTCAAACGTTAGAGACTTTAAATGTTCAGAATGCGAGAAGGAATACAAGGACAAGCGCGTCATGCAGATCCACATGGCGAAAGTTCACGGGATAGGGATCGGAGAGATCAAATTGCCTTCGAAGGAACGTAAATATATCTGTCATATCTGCCCCAAGGCCTACTTCGCGAAGAACAAACTAACGAGGCATTTATACACCCATACCGGGGAGAAGCCGTTCTTCTGCACTATTTGCGATAAGAAGTTTAACGATAAGTCGTACGTGAAGCAACATATGAAGAAAACGCATAACATAGACACAGGTGCTAATAAATAG
- Protein Sequence
- MDSQQCCIICLDRKKSVQNITLVDETNVKFSEKLRYIAPEVEWLGEYAICERCTNELNNACKFRAQCLSVNVERNNLKHEIIDYTNYSNDAIDDENNDYDTDTTKEESNADTHPIFNKGGDFYVCYDCGEKCTTKKDLINHIKKSHGALRESINSTENELNHEDNEVYRVKEFPCTKCGRRYVLESTLRQHMYDCDGIKRHGKAKSDYQCDKCLKYYSTQKILKAHKKKCEGERKCRKTEFQCTKCNKYYISLKTLKDHYKRGCKKDREDNSNVFFCKICDEYFKSVLILRQHVLSEHKTSEYICDICFVNFNTQEEYEIHNNAKHALGSVKTTKRKGRITSRRFTCEVCNEEFTLLKSVIEHCVNFHSMEEKSIRPYACEKCDNRFRSSTNLINHTLYHDRNRTNICSFCGKSFITKNDLTAHESIHFNRRNYKCNKCEKAFKTNTNLRTHHLIVHTDPSLWKYTCQYCNKRFPQKSNHDQHLRRHIGEKNFICPLCKKPFASKSEMQEHVSYHSNVRAYKCTTCGKEYRKKHTYEVHLAKVHGIGNVKIPVREKKHACHICPSRFYDKLKLARHLCTHSGLKPYPCYACDKKFTDKSYLKHHLKTAHNIIEESKYEWNKLNTTIKMTSSEQKCCVCLNSSLTLNRLSRKDDNDISLLTKLRITMPQIEWLRTYQICEQCTNLLNIVYTFRETCIKSDNIRKQLDTINLLKKEVGYVKTEDRQDSSEENEPDNDVKDEDDDDEEDCNDDNDASCSDDDKDYKVNLKDIKEESSTKRKRKVLVFHCEHCTNSYASSTLLVKHCVEQHGMEGKTVRPFVCTRCNSRFGNSSNLMQHIKYHDAVRCNVCTFCGKGFITKTDLNIHEKQHLNKREYKCETCTKCFNTHKDLRSHKLVVHTDPQFWKYFCGICSKKFPIKSNYDCHMRRHTGDKKFECHLCDKKFTDKCVLQRHMRTHSNVRDFKCSECEKEYKDKRVMQIHMAKVHGIGIGEIKLPSKERKYICHICPKAYFAKNKLTRHLYTHTGEKPFFCTICDKKFNDKSYVKQHMKKTHNIDTGANK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -