Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:51132-64721[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.011 0.34 11.2 0.2 2 23 79 100 78 100 0.92

2 27 0.031 0.95 9.8 4.6 1 23 106 128 106 128 0.98

3 27 0.088 2.7 8.3 0.9 1 11 134 144 134 156 0.79

4 27 8e-05 0.0025 17.9 2.1 1 23 162 185 162 185 0.97

5 27 0.0016 0.049 13.8 2.8 1 23 197 220 197 220 0.96

6 27 0.0052 0.16 12.2 0.7 2 23 230 251 229 251 0.96

7 27 0.0001 0.0031 17.6 0.1 1 20 257 276 257 279 0.93

8 27 2.6e-05 0.0008 19.4 1.8 1 23 285 307 285 307 0.98

9 27 0.0027 0.083 13.1 0.0 2 22 314 334 314 334 0.94

10 27 0.82 25 5.3 1.7 2 23 378 399 377 400 0.92

11 27 1.4 42 4.6 2.2 1 23 405 427 405 427 0.95

12 27 0.06 1.8 8.9 2.6 1 23 433 455 433 455 0.91

13 27 0.0026 0.078 13.2 4.5 1 23 461 484 461 484 0.98

14 27 0.00018 0.0054 16.8 1.0 1 23 496 519 496 519 0.96

15 27 9e-05 0.0027 17.8 0.3 3 23 530 550 528 550 0.97

16 27 4.1e-06 0.00013 22.0 0.2 1 23 556 578 556 578 0.98

17 27 0.0014 0.043 14.0 2.6 1 23 584 606 584 606 0.98

18 27 0.0013 0.04 14.1 0.1 1 19 612 630 612 633 0.87

19 27 0.072 2.2 8.6 0.1 2 23 731 752 730 752 0.94

20 27 2.6 80 3.7 6.2 1 23 758 780 758 780 0.97

21 27 0.0056 0.17 12.1 1.9 1 23 786 808 786 808 0.91

22 27 0.00021 0.0065 16.6 2.5 1 23 814 837 814 837 0.98

23 27 0.00072 0.022 14.9 2.0 1 23 849 872 849 872 0.94

24 27 0.027 0.83 10.0 3.4 3 23 883 903 882 903 0.99

25 27 8.6e-06 0.00026 21.0 0.2 3 23 911 931 909 931 0.97

26 27 9.4e-07 2.9e-05 24.0 0.8 1 23 937 959 937 959 0.99

27 27 0.00078 0.024 14.8 0.0 3 21 967 985 966 986 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.011	0.34	11.2	0.2	2	23	79	100	78	100	0.92
2	27	0.031	0.95	9.8	4.6	1	23	106	128	106	128	0.98
3	27	0.088	2.7	8.3	0.9	1	11	134	144	134	156	0.79
4	27	8e-05	0.0025	17.9	2.1	1	23	162	185	162	185	0.97
5	27	0.0016	0.049	13.8	2.8	1	23	197	220	197	220	0.96
6	27	0.0052	0.16	12.2	0.7	2	23	230	251	229	251	0.96
7	27	0.0001	0.0031	17.6	0.1	1	20	257	276	257	279	0.93
8	27	2.6e-05	0.0008	19.4	1.8	1	23	285	307	285	307	0.98
9	27	0.0027	0.083	13.1	0.0	2	22	314	334	314	334	0.94
10	27	0.82	25	5.3	1.7	2	23	378	399	377	400	0.92
11	27	1.4	42	4.6	2.2	1	23	405	427	405	427	0.95
12	27	0.06	1.8	8.9	2.6	1	23	433	455	433	455	0.91
13	27	0.0026	0.078	13.2	4.5	1	23	461	484	461	484	0.98
14	27	0.00018	0.0054	16.8	1.0	1	23	496	519	496	519	0.96
15	27	9e-05	0.0027	17.8	0.3	3	23	530	550	528	550	0.97
16	27	4.1e-06	0.00013	22.0	0.2	1	23	556	578	556	578	0.98
17	27	0.0014	0.043	14.0	2.6	1	23	584	606	584	606	0.98
18	27	0.0013	0.04	14.1	0.1	1	19	612	630	612	633	0.87
19	27	0.072	2.2	8.6	0.1	2	23	731	752	730	752	0.94
20	27	2.6	80	3.7	6.2	1	23	758	780	758	780	0.97
21	27	0.0056	0.17	12.1	1.9	1	23	786	808	786	808	0.91
22	27	0.00021	0.0065	16.6	2.5	1	23	814	837	814	837	0.98
23	27	0.00072	0.022	14.9	2.0	1	23	849	872	849	872	0.94
24	27	0.027	0.83	10.0	3.4	3	23	883	903	882	903	0.99
25	27	8.6e-06	0.00026	21.0	0.2	3	23	911	931	909	931	0.97
26	27	9.4e-07	2.9e-05	24.0	0.8	1	23	937	959	937	959	0.99
27	27	0.00078	0.024	14.8	0.0	3	21	967	985	966	986	0.94

Sequence Information

Coding Sequence: ATGTcgataaacaaaataaagattAAGCAAGTGCCTACTAGTTTCCGTACAACCTTGGGAGTACCAGAACCATGTACGTACCGCATTCTGACTGTTGTAATgaaCAGAGTGAAACGGTCAAGGGCGAAGGGCCTGAAGAGGGGACCCTATAACGTGGAGAAAAAACCTCGAAAATCCAGGCGGAAGACTCCCTTGAAAACGGCCGTGGAACCGATGCTCCTCGAAGAAGCCCTCCAGTGTAAATATTGCCCTGAAACCTACAATAACAACGTGGATTTCGCGCTGCATTCGATACTCCACAACGAGGACGAGCAATACTCTTGCCACCTGTGCAACTTCACGCTGAAGTCAAAGTACAGGTTCGAAAAACACGTGCGGGCTCACGAAGGCACCAATTTGTACAAGTGCGAGATCTGCGACAAACCTTTTAAAATAGGCACGCACGCCTTGGAGCACGTATACTTCCACAACGGAGAGAAACCCTTCCAGTGCGAGATCTGCGGAAAACACTTCATGTACTCCAGACTGCTGAGCGCTCATAGGAGGCTATCCCACTACGAAATACTCACGGGTAAACCCCTGGTGAAGTACGACTGCAAGATCTGCAAGAAACACTACGAGTCTTACCCGGGTCTGCAGAGGCACATGTACAGCAAACACAACGAAGCTGGGGTGGACAAGTCCGTGATGTGCGACGTATGTGGGAAGAAGATCAAGAACAAGGACAAGCTCAAGTTCCACCTGAGGATACACACGGGCGATAAGCCGTTTTCGTGCGTGGTGTGCGGCAGGAGGTTCGCGAAAAAGGACCTCTTGCAGGCCCACATGCCCGTGCACACCGGGGAAAAACCGTTCTCGTGTAAAGTCTGTGGGAAGACGTTCGCGCATCGAGCGCCGCTGTGGTACCACAGGAAGACGCATACGGGGGAGAGGCCCAACGTTTGCCCCATCTGCGGTAAGGGTTTCATCTCCAAGCCCGCCATGTATAACCACGTGAAGACTTGCTACAAGGTgaaaagaaCTAGACGGAAAACCGACGAAGAAACCGCAAAGAGACACCGCAAATCCAGACGCAAATCGGACAAGCCCAAAAGAGTGGTAGTGGAGCCACTCAAACTCGAAGTGCCTTTACGTTGCCATTACTGTGGCGACGCCTATTACAACAACATCGATTACGCCCTCCACTCCAAGGAGCACCACCCCGAAAACAAATATTCCTGTCACCTCTGCGACTACACCAACACGTCGAAGTACCGCACCGAGGCCCACGTCAGGGCCCACGAAGGATCCACCAAGTACCGTTGCGAGATCTGCAACAAGCCCTTCAACATCAGCACCCACGCCAAGGAGCACAAGTACTTCCACACCGGCGAGAAACCCTTCCAGTGTCAAATCTGCGGGAAACACTTCATGTTCTCGCGGATACTGACCAAACACCGACGCACTTCCCACTACGAGATCATGTTCGGCAAACCCCTGGCCAAGTACGACTGTAAGGTGTGCGGCAAGCATTACGAGTCTCTGCCCGGTCTCCAGAGGCACATGTACAGCAACCACAACGACACCGGAGAGGATTGGTCGGTCATCTGCGACATCTGCGGGAAGAAGATCGCCACGAAGGAGAAGCTAAAGTACCACCTGCGCACGCACACGGGAGACAAGCCCTTTCCTTGTCCTCTGTGCCCGAAGAGGTTCCCCAAAAAGGATCAGCTAAAGGAGCACGAGAGGGTGCACACCGGGGAAAAGCCCTTCATGTGCATGTACTGCGGGAAGAATTTTGGGCATAGGGCGCCTTACAGGTACCACATTAAAACCCATACGGGGGAGAGACCGTACACTTGTCCCATCTGCGGCAAGGGGTTTATTTCCAAGTCCGCGAAGGAAGGCCACGCAAACAGTTGCTTCAAGAAATGGCTGAAACCCGCCAGAAGCCCGAAAAAAGTGAAAGAGGAAGACGAATCGGAGACCGAGTGGATACCAAAAGACGAAAAGCTTAAAAGAGAGAGACTGAAGAAGGAGAAACTGAAAAAACAGAAAGGGACCAAGGTAAAAAAGCAGAAGTTAAAAAAGTCGAAGAAAGAAGGCAAACCAAAGTCGACCAAGGAGAAgaaattaccaaaaaacaaGAGCCCGAAACGTCGACGAACCACGGAGGAACACCCTCCCCCCATGGAGCTAGAGGAACCCATAGAGTGCGAAGTCTGTAGCGAGACTTACAGAAACAACGTCGCTTTTGCCCTGCATTCCATAAGCCACAGCGACGACGGGAAGTACCACTGCCACCTGTGCACCTACAAGAACGCCTCCAAGTACCACCTGGAGATGCACGTAAGAGCCCACGAGGGCGCTACCAAATACAAATGCGAGATCTGCAACAAGGCCTTCACCGTGAGCACCCACGCCATAGAGCACAAGTACTTCCACACGGGAGAAAAACCTTTCCAGTGCGAGATATGCGGCAAACACTTCATGTTCTCCTGGTTCTTGGCGTCCCACCGCAGGACCTCGCACTACGAGATCCTCACCGGCAGCCCCCTGGTAAAGTTCGACTGCACCATCTGCAAAAAGCACTACGCCTCCGCCTCCGGCCTCAGAAGGCACAACTTGAAGAACCACAACGAGGCTGGAATAGATACGTCGGTACTGTGCGACATATGCGGGAAGAGACTATCGAGCAGGGAAAAACTGAAGTTCCACCACAGGACCCACACGGGGTACAAGCCCTACGGATGCCAGATCTGCCCCAAGAGCTTCTCGAAGAAGGAGCAGCTGATCGAGCACGTGAGGGTGCACACGGGGGAGAAGCCGTACGTGTGCAAGTACTGCGGCAAGGCTTTCACGCAGAGGACGCCGCTGAGGATCCACGAGAGGACTCACACGGGGGAGAGGCCCAATATCTGCCCCATTTGCGGCAAGGGCTTCGTCTCGAAGACGGCCGTGGAGAGCCACATCAAGAGCTGCTACAATAACCCCCAGGTGATGATCCAGGGACCTATTCAATACCCCTTTTACCCCGCCACTGCCACGCCTATGACGCCAGTCGACCAAGGCGAGATAGAACACAAGTTTTCTATCAGTAACGCGTTTGTCGAGCACAGGCCGTGA
Protein Sequence: MSINKIKIKQVPTSFRTTLGVPEPCTYRILTVVMNRVKRSRAKGLKRGPYNVEKKPRKSRRKTPLKTAVEPMLLEEALQCKYCPETYNNNVDFALHSILHNEDEQYSCHLCNFTLKSKYRFEKHVRAHEGTNLYKCEICDKPFKIGTHALEHVYFHNGEKPFQCEICGKHFMYSRLLSAHRRLSHYEILTGKPLVKYDCKICKKHYESYPGLQRHMYSKHNEAGVDKSVMCDVCGKKIKNKDKLKFHLRIHTGDKPFSCVVCGRRFAKKDLLQAHMPVHTGEKPFSCKVCGKTFAHRAPLWYHRKTHTGERPNVCPICGKGFISKPAMYNHVKTCYKVKRTRRKTDEETAKRHRKSRRKSDKPKRVVVEPLKLEVPLRCHYCGDAYYNNIDYALHSKEHHPENKYSCHLCDYTNTSKYRTEAHVRAHEGSTKYRCEICNKPFNISTHAKEHKYFHTGEKPFQCQICGKHFMFSRILTKHRRTSHYEIMFGKPLAKYDCKVCGKHYESLPGLQRHMYSNHNDTGEDWSVICDICGKKIATKEKLKYHLRTHTGDKPFPCPLCPKRFPKKDQLKEHERVHTGEKPFMCMYCGKNFGHRAPYRYHIKTHTGERPYTCPICGKGFISKSAKEGHANSCFKKWLKPARSPKKVKEEDESETEWIPKDEKLKRERLKKEKLKKQKGTKVKKQKLKKSKKEGKPKSTKEKKLPKNKSPKRRRTTEEHPPPMELEEPIECEVCSETYRNNVAFALHSISHSDDGKYHCHLCTYKNASKYHLEMHVRAHEGATKYKCEICNKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLASHRRTSHYEILTGSPLVKFDCTICKKHYASASGLRRHNLKNHNEAGIDTSVLCDICGKRLSSREKLKFHHRTHTGYKPYGCQICPKSFSKKEQLIEHVRVHTGEKPYVCKYCGKAFTQRTPLRIHERTHTGERPNICPICGKGFVSKTAVESHIKSCYNNPQVMIQGPIQYPFYPATATPMTPVDQGEIEHKFSISNAFVEHRP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -